DEFB1 (defensin, beta 1)

Identity

Other names	BD1
	DEFB-1
	DEFB101
	HBD1
	MGC51822
HGNC	DEFB1
Location	8p23.1
Location_base_pair	Starts at 6715509 and ends at 6722939 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	DEFB1   2766
Entrez_Gene	DEFB1  1672  defensin, beta 1
	Cards
GeneCards	DEFB1
Ensembl	DEFB1 [Search_View]   ENSG00000164825 [Gene_View]
Genatlas	DEFB1
GeneLynx	DEFB1
eGenome	DEFB1
euGene	1672
	Genomic and cartography
GoldenPath	DEFB1  -  8p23.1   chr8:6715509-6722939 -  8p23.1   [Description]    (hg18-March_2006)
Ensembl	DEFB1 - 8p23.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	DEFB1
	Gene and transcription
Genbank	BC033298 [ ENTREZ ]
Genbank	BC047677 [ ENTREZ ]
Genbank	BM673094 [ ENTREZ ]
Genbank	U73945 [ ENTREZ ]
Genbank	X92744 [ ENTREZ ]
RefSeq	NM_005218 [ SRS ]    NM_005218 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_023736 [ SRS ]    NT_023736 [ ENTREZ ]
RefSeq	NW_001839109 [ SRS ]    NW_001839109 [ ENTREZ ]
RefSeq	NW_923840 [ SRS ]    NW_923840 [ ENTREZ ]
AceView	DEFB1 AceView - NCBI
Unigene	Hs.32949 [ SRS ]    Hs.32949 [ NCBI ]     HS32949 [ spliceNest ]
Fast-db	1043 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P60022 [ SRS]    P60022 [ EXPASY ]     P60022 [ INTERPRO ]     P60022 [ UNIPROT ]
Interpro	IPR001855 Defensin_beta [ SRS ]    IPR001855 Defensin_beta [ EBI ]
CluSTr	P60022
Pfam	PF00711 Defensin_beta [ SRS ]    PF00711 Defensin_beta [ Sanger ]    pfam00711 [ NCBI-CDD ]
Blocks	P60022
PDB	1E4S [ SRS ]    1E4S [ PdbSum ],   1E4S [ IMB ]   1E4S [ RSDB ]
PDB	1IJV [ SRS ]    1IJV [ PdbSum ],   1IJV [ IMB ]   1IJV [ RSDB ]
PDB	1KJ5 [ SRS ]    1KJ5 [ PdbSum ],   1KJ5 [ IMB ]   1KJ5 [ RSDB ]
PDB	2NLB [ SRS ]    2NLB [ PdbSum ],   2NLB [ IMB ]   2NLB [ RSDB ]
PDB	2NLC [ SRS ]    2NLC [ PdbSum ],   2NLC [ IMB ]   2NLC [ RSDB ]
PDB	2NLD [ SRS ]    2NLD [ PdbSum ],   2NLD [ IMB ]   2NLD [ RSDB ]
PDB	2NLE [ SRS ]    2NLE [ PdbSum ],   2NLE [ IMB ]   2NLE [ RSDB ]
PDB	2NLF [ SRS ]    2NLF [ PdbSum ],   2NLF [ IMB ]   2NLF [ RSDB ]
PDB	2NLG [ SRS ]    2NLG [ PdbSum ],   2NLG [ IMB ]   2NLG [ RSDB ]
PDB	2NLH [ SRS ]    2NLH [ PdbSum ],   2NLH [ IMB ]   2NLH [ RSDB ]
PDB	2NLP [ SRS ]    2NLP [ PdbSum ],   2NLP [ IMB ]   2NLP [ RSDB ]
PDB	2NLQ [ SRS ]    2NLQ [ PdbSum ],   2NLQ [ IMB ]   2NLQ [ RSDB ]
PDB	2NLS [ SRS ]    2NLS [ PdbSum ],   2NLS [ IMB ]   2NLS [ RSDB ]
PDB	2PLZ [ SRS ]    2PLZ [ PdbSum ],   2PLZ [ IMB ]   2PLZ [ RSDB ]
HPRD	03634
	Protein Interaction databases
DIP	P60022
IntAct	P60022
	Polymorphism : SNP, mutations, diseases
OMIM	602056    [ map ]
GENECLINICS	602056
SNP	DEFB1 [dbSNP-NCBI]
SNP	NM_005218 [SNP-NCI]
SNP	DEFB1 [GeneSNPs - Utah]  DEFB1] [HGBASE - SRS]
HAPMAP	DEFB1 [HAPMAP]
HGMD	DEFB1
	General knowledge
Family Browser	DEFB1 [UCSC Family Browser]
SOURCE	NM_005218
SMD	Hs.32949
SAGE	Hs.32949
GO	extracellular region [Amigo]  extracellular region
GO	chemotaxis [Amigo]  chemotaxis
GO	G-protein coupled receptor protein signaling pathway [Amigo]  G-protein coupled receptor protein signaling pathway
GO	defense response to bacterium [Amigo]  defense response to bacterium
GO	innate immune response [Amigo]  innate immune response
GO	innate immune response [Amigo]  innate immune response
PubGene	DEFB1
TreeFam	DEFB1
CTD	1672 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	DEFB1 Related clones (RZPD - Berlin)
	PubMed
PubMed	64 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:38:06 2008