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DEFB103B (defensin beta 103B)

Identity

Alias_namesdefensin
Other aliasBD-3
DEFB-3
DEFB103
DEFB3
HBD-3
HBD3
HBP-3
HBP3
HGNC (Hugo) DEFB103B
LocusID (NCBI) 55894
Atlas_Id 51609
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7428894 and ends at 7430348 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB103B   31702
Cards
Entrez_Gene (NCBI)DEFB103B  55894  defensin beta 103B
AliasesBD-3; DEFB-3; DEFB103; DEFB3; 
HBD-3; HBD3; HBP-3; HBP3
GeneCards (Weizmann)DEFB103B
Ensembl hg19 (Hinxton)ENSG00000177243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177243 [Gene_View]  chr8:7428894-7430348 [Contig_View]  DEFB103B [Vega]
ICGC DataPortalENSG00000177243
TCGA cBioPortalDEFB103B
AceView (NCBI)DEFB103B
Genatlas (Paris)DEFB103B
WikiGenes55894
SOURCE (Princeton)DEFB103B
Genetics Home Reference (NIH)DEFB103B
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB103B  -     chr8:7428894-7430348 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB103B  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB103B - 8p23.1 [CytoView hg19]  DEFB103B - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB103B [Mapview hg19]  DEFB103B [Mapview hg38]
OMIM606611   
Gene and transcription
Genbank (Entrez)AB037972 AF217245 AF295370 AF301470 AF516673
RefSeq transcript (Entrez)NM_018661
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB103B
Cluster EST : UnigeneHs.637221 [ NCBI ]
CGAP (NCI)Hs.637221
Alternative Splicing GalleryENSG00000177243
Gene ExpressionDEFB103B [ NCBI-GEO ]   DEFB103B [ EBI - ARRAY_EXPRESS ]   DEFB103B [ SEEK ]   DEFB103B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB103B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55894
GTEX Portal (Tissue expression)DEFB103B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP81534   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP81534  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP81534
Splice isoforms : SwissVarP81534
PhosPhoSitePlusP81534
Domains : Interpro (EBI)Defensin_beta-typ   
Domain families : Pfam (Sanger)Defensin_beta (PF00711)   
Domain families : Pfam (NCBI)pfam00711   
Conserved Domain (NCBI)DEFB103B
DMDM Disease mutations55894
Blocks (Seattle)DEFB103B
PDB (SRS)1KJ6   
PDB (PDBSum)1KJ6   
PDB (IMB)1KJ6   
PDB (RSDB)1KJ6   
Structural Biology KnowledgeBase1KJ6   
SCOP (Structural Classification of Proteins)1KJ6   
CATH (Classification of proteins structures)1KJ6   
SuperfamilyP81534
Human Protein AtlasENSG00000177243
Peptide AtlasP81534
HPRD05968
IPIIPI00027327   
Protein Interaction databases
DIP (DOE-UCLA)P81534
IntAct (EBI)P81534
FunCoupENSG00000177243
BioGRIDDEFB103B
STRING (EMBL)DEFB103B
ZODIACDEFB103B
Ontologies - Pathways
QuickGOP81534
Ontology : AmiGOextracellular region  extracellular space  Golgi lumen  antimicrobial humoral response  defense response to bacterium  
Ontology : EGO-EBIextracellular region  extracellular space  Golgi lumen  antimicrobial humoral response  defense response to bacterium  
NDEx NetworkDEFB103B
Atlas of Cancer Signalling NetworkDEFB103B
Wikipedia pathwaysDEFB103B
Orthology - Evolution
OrthoDB55894
GeneTree (enSembl)ENSG00000177243
Phylogenetic Trees/Animal Genes : TreeFamDEFB103B
HOVERGENP81534
HOGENOMP81534
Homologs : HomoloGeneDEFB103B
Homology/Alignments : Family Browser (UCSC)DEFB103B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB103B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB103B
dbVarDEFB103B
ClinVarDEFB103B
1000_GenomesDEFB103B 
Exome Variant ServerDEFB103B
ExAC (Exome Aggregation Consortium)DEFB103B (select the gene name)
Genetic variants : HAPMAP55894
Genomic Variants (DGV)DEFB103B [DGVbeta]
DECIPHERDEFB103B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB103B 
Mutations
ICGC Data PortalDEFB103B 
TCGA Data PortalDEFB103B 
Broad Tumor PortalDEFB103B
OASIS PortalDEFB103B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB103B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB103B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB103B
DgiDB (Drug Gene Interaction Database)DEFB103B
DoCM (Curated mutations)DEFB103B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB103B (select a term)
intoGenDEFB103B
Cancer3DDEFB103B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606611   
Orphanet
MedgenDEFB103B
Genetic Testing Registry DEFB103B
NextProtP81534 [Medical]
TSGene55894
GENETestsDEFB103B
Target ValidationDEFB103B
Huge Navigator DEFB103B [HugePedia]
snp3D : Map Gene to Disease55894
BioCentury BCIQDEFB103B
ClinGenDEFB103B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55894
Chemical/Pharm GKB GenePA134933952
Clinical trialDEFB103B
Miscellaneous
canSAR (ICR)DEFB103B (select the gene name)
Probes
Litterature
PubMed118 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB103B
EVEXDEFB103B
GoPubMedDEFB103B
iHOPDEFB103B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:59:25 CEST 2017

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