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DEFB104A (defensin beta 104A)

Identity

Alias_namesDEFB104
defensin, beta 104
defensin, beta 104A
Alias_symbol (synonym)DEFB4
DEFB-4
Other aliasBD-4
hBD-4
HGNC (Hugo) DEFB104A
LocusID (NCBI) 140596
Atlas_Id 50364
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7470308 and ends at 7475082 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB104A   18115
Cards
Entrez_Gene (NCBI)DEFB104A  140596  defensin beta 104A
AliasesBD-4; DEFB-4; DEFB104; DEFB4; 
hBD-4
GeneCards (Weizmann)DEFB104A
Ensembl hg19 (Hinxton)ENSG00000176782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176782 [Gene_View]  chr8:7470308-7475082 [Contig_View]  DEFB104A [Vega]
ICGC DataPortalENSG00000176782
TCGA cBioPortalDEFB104A
AceView (NCBI)DEFB104A
Genatlas (Paris)DEFB104A
WikiGenes140596
SOURCE (Princeton)DEFB104A
Genetics Home Reference (NIH)DEFB104A
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB104A  -     chr8:7470308-7475082 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB104A  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB104A - 8p23.1 [CytoView hg19]  DEFB104A - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB104A [Mapview hg19]  DEFB104A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ314834 BC100848 BC100849 BC100850 BC100851
RefSeq transcript (Entrez)NM_080389
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB104A
Cluster EST : UnigeneHs.559507 [ NCBI ]
CGAP (NCI)Hs.559507
Alternative Splicing GalleryENSG00000176782
Gene ExpressionDEFB104A [ NCBI-GEO ]   DEFB104A [ EBI - ARRAY_EXPRESS ]   DEFB104A [ SEEK ]   DEFB104A [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB104A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140596
GTEX Portal (Tissue expression)DEFB104A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTQ1
Splice isoforms : SwissVarQ8WTQ1
PhosPhoSitePlusQ8WTQ1
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB104A
DMDM Disease mutations140596
Blocks (Seattle)DEFB104A
SuperfamilyQ8WTQ1
Human Protein AtlasENSG00000176782
Peptide AtlasQ8WTQ1
HPRD10870
IPIIPI00102797   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTQ1
IntAct (EBI)Q8WTQ1
FunCoupENSG00000176782
BioGRIDDEFB104A
STRING (EMBL)DEFB104A
ZODIACDEFB104A
Ontologies - Pathways
QuickGOQ8WTQ1
Ontology : AmiGOextracellular region  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  defense response to bacterium  innate immune response  
NDEx NetworkDEFB104A
Atlas of Cancer Signalling NetworkDEFB104A
Wikipedia pathwaysDEFB104A
Orthology - Evolution
OrthoDB140596
GeneTree (enSembl)ENSG00000176782
Phylogenetic Trees/Animal Genes : TreeFamDEFB104A
HOVERGENQ8WTQ1
HOGENOMQ8WTQ1
Homologs : HomoloGeneDEFB104A
Homology/Alignments : Family Browser (UCSC)DEFB104A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB104A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB104A
dbVarDEFB104A
ClinVarDEFB104A
1000_GenomesDEFB104A 
Exome Variant ServerDEFB104A
ExAC (Exome Aggregation Consortium)DEFB104A (select the gene name)
Genetic variants : HAPMAP140596
Genomic Variants (DGV)DEFB104A [DGVbeta]
DECIPHERDEFB104A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB104A 
Mutations
ICGC Data PortalDEFB104A 
TCGA Data PortalDEFB104A 
Broad Tumor PortalDEFB104A
OASIS PortalDEFB104A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB104A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB104A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB104A
DgiDB (Drug Gene Interaction Database)DEFB104A
DoCM (Curated mutations)DEFB104A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB104A (select a term)
intoGenDEFB104A
Cancer3DDEFB104A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB104A
Genetic Testing Registry DEFB104A
NextProtQ8WTQ1 [Medical]
TSGene140596
GENETestsDEFB104A
Target ValidationDEFB104A
Huge Navigator DEFB104A [HugePedia]
snp3D : Map Gene to Disease140596
BioCentury BCIQDEFB104A
ClinGenDEFB104A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140596
Chemical/Pharm GKB GenePA38506
Clinical trialDEFB104A
Miscellaneous
canSAR (ICR)DEFB104A (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB104A
EVEXDEFB104A
GoPubMedDEFB104A
iHOPDEFB104A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:59:25 CEST 2017

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