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DEFB106A (defensin beta 106A)

Identity

Alias_namesDEFB106
defensin, beta 106
defensin, beta 106A
Alias_symbol (synonym)DEFB-6
Other aliasBD-6
HGNC (Hugo) DEFB106A
LocusID (NCBI) 245909
Atlas_Id 62389
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7482504 and ends at 7486387 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB106A   18088
Cards
Entrez_Gene (NCBI)DEFB106A  245909  defensin beta 106A
AliasesBD-6; DEFB-6; DEFB106
GeneCards (Weizmann)DEFB106A
Ensembl hg19 (Hinxton)ENSG00000186579 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186579 [Gene_View]  chr8:7482504-7486387 [Contig_View]  DEFB106A [Vega]
ICGC DataPortalENSG00000186579
TCGA cBioPortalDEFB106A
AceView (NCBI)DEFB106A
Genatlas (Paris)DEFB106A
WikiGenes245909
SOURCE (Princeton)DEFB106A
Genetics Home Reference (NIH)DEFB106A
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB106A  -     chr8:7482504-7486387 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB106A  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB106A - 8p23.1 [CytoView hg19]  DEFB106A - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB106A [Mapview hg19]  DEFB106A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB089181 AF529417 AF540978 AY122466 BC100844
RefSeq transcript (Entrez)NM_152251
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB106A
Cluster EST : UnigeneHs.535925 [ NCBI ]
CGAP (NCI)Hs.535925
Alternative Splicing GalleryENSG00000186579
Gene ExpressionDEFB106A [ NCBI-GEO ]   DEFB106A [ EBI - ARRAY_EXPRESS ]   DEFB106A [ SEEK ]   DEFB106A [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB106A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245909
GTEX Portal (Tissue expression)DEFB106A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N104   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N104  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N104
Splice isoforms : SwissVarQ8N104
PhosPhoSitePlusQ8N104
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB106A
DMDM Disease mutations245909
Blocks (Seattle)DEFB106A
PDB (SRS)2LWL   
PDB (PDBSum)2LWL   
PDB (IMB)2LWL   
PDB (RSDB)2LWL   
Structural Biology KnowledgeBase2LWL   
SCOP (Structural Classification of Proteins)2LWL   
CATH (Classification of proteins structures)2LWL   
SuperfamilyQ8N104
Human Protein AtlasENSG00000186579
Peptide AtlasQ8N104
HPRD10872
IPIIPI00166034   
Protein Interaction databases
DIP (DOE-UCLA)Q8N104
IntAct (EBI)Q8N104
FunCoupENSG00000186579
BioGRIDDEFB106A
STRING (EMBL)DEFB106A
ZODIACDEFB106A
Ontologies - Pathways
QuickGOQ8N104
Ontology : AmiGOextracellular region  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  defense response to bacterium  innate immune response  
NDEx NetworkDEFB106A
Atlas of Cancer Signalling NetworkDEFB106A
Wikipedia pathwaysDEFB106A
Orthology - Evolution
OrthoDB245909
GeneTree (enSembl)ENSG00000186579
Phylogenetic Trees/Animal Genes : TreeFamDEFB106A
HOVERGENQ8N104
HOGENOMQ8N104
Homologs : HomoloGeneDEFB106A
Homology/Alignments : Family Browser (UCSC)DEFB106A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB106A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB106A
dbVarDEFB106A
ClinVarDEFB106A
1000_GenomesDEFB106A 
Exome Variant ServerDEFB106A
ExAC (Exome Aggregation Consortium)DEFB106A (select the gene name)
Genetic variants : HAPMAP245909
Genomic Variants (DGV)DEFB106A [DGVbeta]
DECIPHERDEFB106A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB106A 
Mutations
ICGC Data PortalDEFB106A 
TCGA Data PortalDEFB106A 
Broad Tumor PortalDEFB106A
OASIS PortalDEFB106A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB106A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB106A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB106A
DgiDB (Drug Gene Interaction Database)DEFB106A
DoCM (Curated mutations)DEFB106A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB106A (select a term)
intoGenDEFB106A
Cancer3DDEFB106A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB106A
Genetic Testing Registry DEFB106A
NextProtQ8N104 [Medical]
TSGene245909
GENETestsDEFB106A
Target ValidationDEFB106A
Huge Navigator DEFB106A [HugePedia]
snp3D : Map Gene to Disease245909
BioCentury BCIQDEFB106A
ClinGenDEFB106A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245909
Chemical/Pharm GKB GenePA38484
Clinical trialDEFB106A
Miscellaneous
canSAR (ICR)DEFB106A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB106A
EVEXDEFB106A
GoPubMedDEFB106A
iHOPDEFB106A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:35 CEST 2017

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