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DEFB106B (defensin, beta 106B)

Identity

Alias_namesdefensin, beta 106B
Other aliasBD-6
DEFB-6
HGNC (Hugo) DEFB106B
LocusID (NCBI) 503841
Atlas_Id 62390
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7682694 and ends at 7686575 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB106B   28879
Cards
Entrez_Gene (NCBI)DEFB106B  503841  defensin, beta 106B
AliasesBD-6; DEFB-6
GeneCards (Weizmann)DEFB106B
Ensembl hg19 (Hinxton)ENSG00000187082 [Gene_View]  chr8:7682694-7686575 [Contig_View]  DEFB106B [Vega]
Ensembl hg38 (Hinxton)ENSG00000187082 [Gene_View]  chr8:7682694-7686575 [Contig_View]  DEFB106B [Vega]
ICGC DataPortalENSG00000187082
TCGA cBioPortalDEFB106B
AceView (NCBI)DEFB106B
Genatlas (Paris)DEFB106B
WikiGenes503841
SOURCE (Princeton)DEFB106B
Genetics Home Reference (NIH)DEFB106B
Genomic and cartography
GoldenPath hg19 (UCSC)DEFB106B  -     chr8:7682694-7686575 +  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEFB106B  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblDEFB106B - 8p23.1 [CytoView hg19]  DEFB106B - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB106B [Mapview hg19]  DEFB106B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB089181 AF529417 AF540978 AY122466 BC100844
RefSeq transcript (Entrez)NM_001040704
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_023736 NT_187570 NW_004929335
Consensus coding sequences : CCDS (NCBI)DEFB106B
Cluster EST : UnigeneHs.535925 [ NCBI ]
CGAP (NCI)Hs.535925
Alternative Splicing GalleryENSG00000187082
Gene ExpressionDEFB106B [ NCBI-GEO ]   DEFB106B [ EBI - ARRAY_EXPRESS ]   DEFB106B [ SEEK ]   DEFB106B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB106B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503841
GTEX Portal (Tissue expression)DEFB106B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N104   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N104  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N104
Splice isoforms : SwissVarQ8N104
PhosPhoSitePlusQ8N104
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB106B
DMDM Disease mutations503841
Blocks (Seattle)DEFB106B
PDB (SRS)2LWL   
PDB (PDBSum)2LWL   
PDB (IMB)2LWL   
PDB (RSDB)2LWL   
Structural Biology KnowledgeBase2LWL   
SCOP (Structural Classification of Proteins)2LWL   
CATH (Classification of proteins structures)2LWL   
SuperfamilyQ8N104
Human Protein AtlasENSG00000187082
Peptide AtlasQ8N104
Protein Interaction databases
DIP (DOE-UCLA)Q8N104
IntAct (EBI)Q8N104
FunCoupENSG00000187082
BioGRIDDEFB106B
STRING (EMBL)DEFB106B
ZODIACDEFB106B
Ontologies - Pathways
QuickGOQ8N104
Ontology : AmiGOextracellular region  cell surface  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  cell surface  defense response to bacterium  innate immune response  
NDEx NetworkDEFB106B
Atlas of Cancer Signalling NetworkDEFB106B
Wikipedia pathwaysDEFB106B
Orthology - Evolution
OrthoDB503841
GeneTree (enSembl)ENSG00000187082
Phylogenetic Trees/Animal Genes : TreeFamDEFB106B
HOVERGENQ8N104
HOGENOMQ8N104
Homologs : HomoloGeneDEFB106B
Homology/Alignments : Family Browser (UCSC)DEFB106B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB106B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB106B
dbVarDEFB106B
ClinVarDEFB106B
1000_GenomesDEFB106B 
Exome Variant ServerDEFB106B
ExAC (Exome Aggregation Consortium)DEFB106B (select the gene name)
Genetic variants : HAPMAP503841
Genomic Variants (DGV)DEFB106B [DGVbeta]
DECIPHER (Syndromes)8:7682694-7686575  ENSG00000187082
CONAN: Copy Number AnalysisDEFB106B 
Mutations
ICGC Data PortalDEFB106B 
TCGA Data PortalDEFB106B 
Broad Tumor PortalDEFB106B
OASIS PortalDEFB106B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB106B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB106B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB106B
DgiDB (Drug Gene Interaction Database)DEFB106B
DoCM (Curated mutations)DEFB106B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB106B (select a term)
intoGenDEFB106B
Cancer3DDEFB106B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB106B
Genetic Testing Registry DEFB106B
NextProtQ8N104 [Medical]
TSGene503841
GENETestsDEFB106B
Huge Navigator DEFB106B [HugePedia]
snp3D : Map Gene to Disease503841
BioCentury BCIQDEFB106B
ClinGenDEFB106B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503841
Chemical/Pharm GKB GenePA142671992
Clinical trialDEFB106B
Miscellaneous
canSAR (ICR)DEFB106B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB106B
EVEXDEFB106B
GoPubMedDEFB106B
iHOPDEFB106B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:20 CET 2017

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