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DEFB107A (defensin beta 107A)

Identity

Alias_namesDEFB107
defensin, beta 107A
Alias_symbol (synonym)DEFB-7
Other aliasBD-7
HGNC (Hugo) DEFB107A
LocusID (NCBI) 245910
Atlas_Id 62391
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7495846 and ends at 7509311 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB107A   18086
Cards
Entrez_Gene (NCBI)DEFB107A  245910  defensin beta 107A
AliasesBD-7; DEFB-7; DEFB107
GeneCards (Weizmann)DEFB107A
Ensembl hg19 (Hinxton)ENSG00000186572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186572 [Gene_View]  chr8:7495846-7509311 [Contig_View]  DEFB107A [Vega]
ICGC DataPortalENSG00000186572
TCGA cBioPortalDEFB107A
AceView (NCBI)DEFB107A
Genatlas (Paris)DEFB107A
WikiGenes245910
SOURCE (Princeton)DEFB107A
Genetics Home Reference (NIH)DEFB107A
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB107A  -     chr8:7495846-7509311 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB107A  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB107A - 8p23.1 [CytoView hg19]  DEFB107A - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB107A [Mapview hg19]  DEFB107A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF540979 AY122467 BC137510 BC137513 DQ119826
RefSeq transcript (Entrez)NM_001037668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB107A
Cluster EST : UnigeneHs.713490 [ NCBI ]
CGAP (NCI)Hs.713490
Alternative Splicing GalleryENSG00000186572
Gene ExpressionDEFB107A [ NCBI-GEO ]   DEFB107A [ EBI - ARRAY_EXPRESS ]   DEFB107A [ SEEK ]   DEFB107A [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB107A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245910
GTEX Portal (Tissue expression)DEFB107A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZN7
Splice isoforms : SwissVarQ8IZN7
PhosPhoSitePlusQ8IZN7
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB107A
DMDM Disease mutations245910
Blocks (Seattle)DEFB107A
SuperfamilyQ8IZN7
Human Protein AtlasENSG00000186572
Peptide AtlasQ8IZN7
IPIIPI00218032   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZN7
IntAct (EBI)Q8IZN7
FunCoupENSG00000186572
BioGRIDDEFB107A
STRING (EMBL)DEFB107A
ZODIACDEFB107A
Ontologies - Pathways
QuickGOQ8IZN7
Ontology : AmiGOextracellular region  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  defense response to bacterium  innate immune response  
NDEx NetworkDEFB107A
Atlas of Cancer Signalling NetworkDEFB107A
Wikipedia pathwaysDEFB107A
Orthology - Evolution
OrthoDB245910
GeneTree (enSembl)ENSG00000186572
Phylogenetic Trees/Animal Genes : TreeFamDEFB107A
HOVERGENQ8IZN7
HOGENOMQ8IZN7
Homologs : HomoloGeneDEFB107A
Homology/Alignments : Family Browser (UCSC)DEFB107A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB107A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB107A
dbVarDEFB107A
ClinVarDEFB107A
1000_GenomesDEFB107A 
Exome Variant ServerDEFB107A
ExAC (Exome Aggregation Consortium)DEFB107A (select the gene name)
Genetic variants : HAPMAP245910
Genomic Variants (DGV)DEFB107A [DGVbeta]
DECIPHERDEFB107A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB107A 
Mutations
ICGC Data PortalDEFB107A 
TCGA Data PortalDEFB107A 
Broad Tumor PortalDEFB107A
OASIS PortalDEFB107A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB107A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB107A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB107A
DgiDB (Drug Gene Interaction Database)DEFB107A
DoCM (Curated mutations)DEFB107A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB107A (select a term)
intoGenDEFB107A
Cancer3DDEFB107A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB107A
Genetic Testing Registry DEFB107A
NextProtQ8IZN7 [Medical]
TSGene245910
GENETestsDEFB107A
Target ValidationDEFB107A
Huge Navigator DEFB107A [HugePedia]
snp3D : Map Gene to Disease245910
BioCentury BCIQDEFB107A
ClinGenDEFB107A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245910
Chemical/Pharm GKB GenePA38482
Clinical trialDEFB107A
Miscellaneous
canSAR (ICR)DEFB107A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB107A
EVEXDEFB107A
GoPubMedDEFB107A
iHOPDEFB107A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:35 CEST 2017

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