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DEFB107B (defensin beta 107B)

Identity

Alias_namesdefensin, beta 107B
Alias_symbol (synonym)HsT21816
Other alias
HGNC (Hugo) DEFB107B
LocusID (NCBI) 503614
Atlas_Id 62392
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7495846 and ends at 7509311 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB107B   31918
Cards
Entrez_Gene (NCBI)DEFB107B  503614  defensin beta 107B
AliasesHsT21816
GeneCards (Weizmann)DEFB107B
Ensembl hg19 (Hinxton)ENSG00000198129 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198129 [Gene_View]  chr8:7495846-7509311 [Contig_View]  DEFB107B [Vega]
ICGC DataPortalENSG00000198129
TCGA cBioPortalDEFB107B
AceView (NCBI)DEFB107B
Genatlas (Paris)DEFB107B
WikiGenes503614
SOURCE (Princeton)DEFB107B
Genetics Home Reference (NIH)DEFB107B
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB107B  -     chr8:7495846-7509311 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB107B  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB107B - 8p23.1 [CytoView hg19]  DEFB107B - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB107B [Mapview hg19]  DEFB107B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF540979 AY122467 BC137510 BC137513 BC148565
RefSeq transcript (Entrez)NM_001040705
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187570
Consensus coding sequences : CCDS (NCBI)DEFB107B
Cluster EST : UnigeneHs.713490 [ NCBI ]
CGAP (NCI)Hs.713490
Alternative Splicing GalleryENSG00000198129
Gene ExpressionDEFB107B [ NCBI-GEO ]   DEFB107B [ EBI - ARRAY_EXPRESS ]   DEFB107B [ SEEK ]   DEFB107B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB107B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503614
GTEX Portal (Tissue expression)DEFB107B
Human Protein AtlasENSG00000198129-DEFB107B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZN7
Splice isoforms : SwissVarQ8IZN7
PhosPhoSitePlusQ8IZN7
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB107B
DMDM Disease mutations503614
Blocks (Seattle)DEFB107B
SuperfamilyQ8IZN7
Human Protein Atlas [tissue]ENSG00000198129-DEFB107B [tissue]
Peptide AtlasQ8IZN7
Protein Interaction databases
DIP (DOE-UCLA)Q8IZN7
IntAct (EBI)Q8IZN7
FunCoupENSG00000198129
BioGRIDDEFB107B
STRING (EMBL)DEFB107B
ZODIACDEFB107B
Ontologies - Pathways
QuickGOQ8IZN7
Ontology : AmiGOextracellular region  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  defense response to bacterium  innate immune response  
NDEx NetworkDEFB107B
Atlas of Cancer Signalling NetworkDEFB107B
Wikipedia pathwaysDEFB107B
Orthology - Evolution
OrthoDB503614
GeneTree (enSembl)ENSG00000198129
Phylogenetic Trees/Animal Genes : TreeFamDEFB107B
HOVERGENQ8IZN7
HOGENOMQ8IZN7
Homologs : HomoloGeneDEFB107B
Homology/Alignments : Family Browser (UCSC)DEFB107B
Gene fusions - Rearrangements
Tumor Fusion PortalDEFB107B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB107B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB107B
dbVarDEFB107B
ClinVarDEFB107B
1000_GenomesDEFB107B 
Exome Variant ServerDEFB107B
ExAC (Exome Aggregation Consortium)ENSG00000198129
GNOMAD BrowserENSG00000198129
Genetic variants : HAPMAP503614
Genomic Variants (DGV)DEFB107B [DGVbeta]
DECIPHERDEFB107B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB107B 
Mutations
ICGC Data PortalDEFB107B 
TCGA Data PortalDEFB107B 
Broad Tumor PortalDEFB107B
OASIS PortalDEFB107B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEFB107B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB107B
DgiDB (Drug Gene Interaction Database)DEFB107B
DoCM (Curated mutations)DEFB107B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB107B (select a term)
intoGenDEFB107B
Cancer3DDEFB107B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDEFB107B
MedgenDEFB107B
Genetic Testing Registry DEFB107B
NextProtQ8IZN7 [Medical]
TSGene503614
GENETestsDEFB107B
Target ValidationDEFB107B
Huge Navigator DEFB107B [HugePedia]
snp3D : Map Gene to Disease503614
BioCentury BCIQDEFB107B
ClinGenDEFB107B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503614
Chemical/Pharm GKB GenePA142671993
Clinical trialDEFB107B
Miscellaneous
canSAR (ICR)DEFB107B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB107B
EVEXDEFB107B
GoPubMedDEFB107B
iHOPDEFB107B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:18:02 CET 2017

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