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DEFB108B (defensin beta 108B)

Identity

Alias_namesdefensin, beta 108B
Other aliasDEFB-8
hBD-8
HGNC (Hugo) DEFB108B
LocusID (NCBI) 245911
Atlas_Id 62393
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71833200 and ends at 71837562 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB108B   29966
Cards
Entrez_Gene (NCBI)DEFB108B  245911  defensin beta 108B
AliasesDEFB-8; hBD-8
GeneCards (Weizmann)DEFB108B
Ensembl hg19 (Hinxton)ENSG00000184276 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184276 [Gene_View]  chr11:71833200-71837562 [Contig_View]  DEFB108B [Vega]
ICGC DataPortalENSG00000184276
TCGA cBioPortalDEFB108B
AceView (NCBI)DEFB108B
Genatlas (Paris)DEFB108B
WikiGenes245911
SOURCE (Princeton)DEFB108B
Genetics Home Reference (NIH)DEFB108B
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB108B  -     chr11:71833200-71837562 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB108B  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblDEFB108B - 11q13.4 [CytoView hg19]  DEFB108B - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIDEFB108B [Mapview hg19]  DEFB108B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF529416 AY122468 BC140259 BC141633 BX095678
RefSeq transcript (Entrez)NM_001002035
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB108B
Cluster EST : UnigeneHs.555032 [ NCBI ]
CGAP (NCI)Hs.555032
Alternative Splicing GalleryENSG00000184276
Gene ExpressionDEFB108B [ NCBI-GEO ]   DEFB108B [ EBI - ARRAY_EXPRESS ]   DEFB108B [ SEEK ]   DEFB108B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB108B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245911
GTEX Portal (Tissue expression)DEFB108B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NET1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NET1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NET1
Splice isoforms : SwissVarQ8NET1
PhosPhoSitePlusQ8NET1
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB108B
DMDM Disease mutations245911
Blocks (Seattle)DEFB108B
SuperfamilyQ8NET1
Human Protein AtlasENSG00000184276
Peptide AtlasQ8NET1
HPRD16790
IPIIPI00172575   
Protein Interaction databases
DIP (DOE-UCLA)Q8NET1
IntAct (EBI)Q8NET1
FunCoupENSG00000184276
BioGRIDDEFB108B
STRING (EMBL)DEFB108B
ZODIACDEFB108B
Ontologies - Pathways
QuickGOQ8NET1
Ontology : AmiGOextracellular region  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  defense response to bacterium  innate immune response  
NDEx NetworkDEFB108B
Atlas of Cancer Signalling NetworkDEFB108B
Wikipedia pathwaysDEFB108B
Orthology - Evolution
OrthoDB245911
GeneTree (enSembl)ENSG00000184276
Phylogenetic Trees/Animal Genes : TreeFamDEFB108B
HOVERGENQ8NET1
HOGENOMQ8NET1
Homologs : HomoloGeneDEFB108B
Homology/Alignments : Family Browser (UCSC)DEFB108B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB108B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB108B
dbVarDEFB108B
ClinVarDEFB108B
1000_GenomesDEFB108B 
Exome Variant ServerDEFB108B
ExAC (Exome Aggregation Consortium)DEFB108B (select the gene name)
Genetic variants : HAPMAP245911
Genomic Variants (DGV)DEFB108B [DGVbeta]
DECIPHERDEFB108B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB108B 
Mutations
ICGC Data PortalDEFB108B 
TCGA Data PortalDEFB108B 
Broad Tumor PortalDEFB108B
OASIS PortalDEFB108B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB108B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB108B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB108B
DgiDB (Drug Gene Interaction Database)DEFB108B
DoCM (Curated mutations)DEFB108B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB108B (select a term)
intoGenDEFB108B
Cancer3DDEFB108B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB108B
Genetic Testing Registry DEFB108B
NextProtQ8NET1 [Medical]
TSGene245911
GENETestsDEFB108B
Target ValidationDEFB108B
Huge Navigator DEFB108B [HugePedia]
snp3D : Map Gene to Disease245911
BioCentury BCIQDEFB108B
ClinGenDEFB108B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245911
Chemical/Pharm GKB GenePA142671994
Clinical trialDEFB108B
Miscellaneous
canSAR (ICR)DEFB108B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB108B
EVEXDEFB108B
GoPubMedDEFB108B
iHOPDEFB108B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:13:24 CEST 2017

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