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DEFB108P1 (defensin, beta 108, pseudogene 1)

Identity

Alias_namesDEFB108
defensin, beta 108
defensin, beta 108, pseudogene 1
Alias_symbol (synonym)DEFB-8
DEFB108A
Other alias
HGNC (Hugo) DEFB108P1
LocusID (NCBI) 503694
Atlas_Id 62394
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7791979 and ends at 7796292 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DEFB108P1   18089
Cards
Entrez_Gene (NCBI)DEFB108P1  503694  defensin, beta 108, pseudogene 1
AliasesDEFB-8; DEFB108; DEFB108A
GeneCards (Weizmann)DEFB108P1
Ensembl hg19 (Hinxton) [Gene_View]  chr8:7791979-7796292 [Contig_View]  DEFB108P1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:7791979-7796292 [Contig_View]  DEFB108P1 [Vega]
TCGA cBioPortalDEFB108P1
AceView (NCBI)DEFB108P1
Genatlas (Paris)DEFB108P1
WikiGenes503694
SOURCE (Princeton)DEFB108P1
Genetics Home Reference (NIH)DEFB108P1
Genomic and cartography
GoldenPath hg19 (UCSC)DEFB108P1  -     chr8:7791979-7796292 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEFB108P1  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblDEFB108P1 - 8p23.1 [CytoView hg19]  DEFB108P1 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB108P1 [Mapview hg19]  DEFB108P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF540980
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NG_005426 NT_077531
Consensus coding sequences : CCDS (NCBI)DEFB108P1
Cluster EST : UnigeneHs.583890 [ NCBI ]
CGAP (NCI)Hs.583890
Gene ExpressionDEFB108P1 [ NCBI-GEO ]   DEFB108P1 [ EBI - ARRAY_EXPRESS ]   DEFB108P1 [ SEEK ]   DEFB108P1 [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB108P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503694
GTEX Portal (Tissue expression)DEFB108P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXU0
Splice isoforms : SwissVarA8MXU0
PhosPhoSitePlusA8MXU0
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB108P1
DMDM Disease mutations503694
Blocks (Seattle)DEFB108P1
SuperfamilyA8MXU0
Peptide AtlasA8MXU0
IPIIPI00853126   
Protein Interaction databases
DIP (DOE-UCLA)A8MXU0
IntAct (EBI)A8MXU0
BioGRIDDEFB108P1
STRING (EMBL)DEFB108P1
ZODIACDEFB108P1
Ontologies - Pathways
QuickGOA8MXU0
Ontology : AmiGOextracellular region  defense response to bacterium  
Ontology : EGO-EBIextracellular region  defense response to bacterium  
NDEx NetworkDEFB108P1
Atlas of Cancer Signalling NetworkDEFB108P1
Wikipedia pathwaysDEFB108P1
Orthology - Evolution
OrthoDB503694
Phylogenetic Trees/Animal Genes : TreeFamDEFB108P1
HOVERGENA8MXU0
HOGENOMA8MXU0
Homologs : HomoloGeneDEFB108P1
Homology/Alignments : Family Browser (UCSC)DEFB108P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB108P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB108P1
dbVarDEFB108P1
ClinVarDEFB108P1
1000_GenomesDEFB108P1 
Exome Variant ServerDEFB108P1
ExAC (Exome Aggregation Consortium)DEFB108P1 (select the gene name)
Genetic variants : HAPMAP503694
Genomic Variants (DGV)DEFB108P1 [DGVbeta]
DECIPHER (Syndromes)8:7791979-7796292  
CONAN: Copy Number AnalysisDEFB108P1 
Mutations
ICGC Data PortalDEFB108P1 
TCGA Data PortalDEFB108P1 
Broad Tumor PortalDEFB108P1
OASIS PortalDEFB108P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEFB108P1
BioMutasearch DEFB108P1
DgiDB (Drug Gene Interaction Database)DEFB108P1
DoCM (Curated mutations)DEFB108P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB108P1 (select a term)
intoGenDEFB108P1
Cancer3DDEFB108P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB108P1
Genetic Testing Registry DEFB108P1
NextProtA8MXU0 [Medical]
TSGene503694
GENETestsDEFB108P1
Huge Navigator DEFB108P1 [HugePedia]
snp3D : Map Gene to Disease503694
BioCentury BCIQDEFB108P1
ClinGenDEFB108P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503694
Chemical/Pharm GKB GenePA38485
Clinical trialDEFB108P1
Miscellaneous
canSAR (ICR)DEFB108P1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB108P1
EVEXDEFB108P1
GoPubMedDEFB108P1
iHOPDEFB108P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:21 CET 2017

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