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DEFB108P2 (defensin, beta 108, pseudogene 2)

Identity

Alias_namesdefensin, beta 108, pseudogene 2
Other alias-
HGNC (Hugo) DEFB108P2
LocusID (NCBI) 503837
Atlas_Id 62395
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7791979 and ends at 7796292 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DEFB108P2   30847
Cards
Entrez_Gene (NCBI)DEFB108P2  503837  defensin, beta 108, pseudogene 2
Aliases
GeneCards (Weizmann)DEFB108P2
Ensembl hg19 (Hinxton) [Gene_View]  chr8:7791979-7796292 [Contig_View]  DEFB108P2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:7791979-7796292 [Contig_View]  DEFB108P2 [Vega]
TCGA cBioPortalDEFB108P2
AceView (NCBI)DEFB108P2
Genatlas (Paris)DEFB108P2
WikiGenes503837
SOURCE (Princeton)DEFB108P2
Genetics Home Reference (NIH)DEFB108P2
Genomic and cartography
GoldenPath hg19 (UCSC)DEFB108P2  -     chr8:7791979-7796292 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEFB108P2  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblDEFB108P2 - 8p23.1 [CytoView hg19]  DEFB108P2 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB108P2 [Mapview hg19]  DEFB108P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF540980
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_007389 NT_023736 NT_187570 NW_004929335
Consensus coding sequences : CCDS (NCBI)DEFB108P2
Cluster EST : UnigeneHs.583890 [ NCBI ]
CGAP (NCI)Hs.583890
Gene ExpressionDEFB108P2 [ NCBI-GEO ]   DEFB108P2 [ EBI - ARRAY_EXPRESS ]   DEFB108P2 [ SEEK ]   DEFB108P2 [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB108P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503837
GTEX Portal (Tissue expression)DEFB108P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXU0
Splice isoforms : SwissVarA8MXU0
PhosPhoSitePlusA8MXU0
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB108P2
DMDM Disease mutations503837
Blocks (Seattle)DEFB108P2
SuperfamilyA8MXU0
Peptide AtlasA8MXU0
Protein Interaction databases
DIP (DOE-UCLA)A8MXU0
IntAct (EBI)A8MXU0
BioGRIDDEFB108P2
STRING (EMBL)DEFB108P2
ZODIACDEFB108P2
Ontologies - Pathways
QuickGOA8MXU0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDEFB108P2
Atlas of Cancer Signalling NetworkDEFB108P2
Wikipedia pathwaysDEFB108P2
Orthology - Evolution
OrthoDB503837
Phylogenetic Trees/Animal Genes : TreeFamDEFB108P2
HOVERGENA8MXU0
HOGENOMA8MXU0
Homologs : HomoloGeneDEFB108P2
Homology/Alignments : Family Browser (UCSC)DEFB108P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB108P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB108P2
dbVarDEFB108P2
ClinVarDEFB108P2
1000_GenomesDEFB108P2 
Exome Variant ServerDEFB108P2
ExAC (Exome Aggregation Consortium)DEFB108P2 (select the gene name)
Genetic variants : HAPMAP503837
Genomic Variants (DGV)DEFB108P2 [DGVbeta]
DECIPHER (Syndromes)8:7791979-7796292  
CONAN: Copy Number AnalysisDEFB108P2 
Mutations
ICGC Data PortalDEFB108P2 
TCGA Data PortalDEFB108P2 
Broad Tumor PortalDEFB108P2
OASIS PortalDEFB108P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEFB108P2
BioMutasearch DEFB108P2
DgiDB (Drug Gene Interaction Database)DEFB108P2
DoCM (Curated mutations)DEFB108P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB108P2 (select a term)
intoGenDEFB108P2
Cancer3DDEFB108P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB108P2
Genetic Testing Registry DEFB108P2
NextProtA8MXU0 [Medical]
TSGene503837
GENETestsDEFB108P2
Huge Navigator DEFB108P2 [HugePedia]
snp3D : Map Gene to Disease503837
BioCentury BCIQDEFB108P2
ClinGenDEFB108P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503837
Chemical/Pharm GKB GenePA142671995
Clinical trialDEFB108P2
Miscellaneous
canSAR (ICR)DEFB108P2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB108P2
EVEXDEFB108P2
GoPubMedDEFB108P2
iHOPDEFB108P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:22 CET 2017

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