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DEFB109A (defensin beta 109A (pseudogene))

Identity

Alias_namesDEFB109
DEFB109P1
defensin, beta 109
defensin, beta 109, pseudogene 1
defensin beta 109 pseudogene 1
Alias_symbol (synonym)DEFB-9
Other alias
HGNC (Hugo) DEFB109A
LocusID (NCBI) 245912
Atlas_Id 79892
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 12393284 and ends at 12400365 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DEFB109A   18090
Cards
Entrez_Gene (NCBI)DEFB109A  245912  defensin beta 109A (pseudogene)
AliasesDEFB-9; DEFB109; DEFB109P1
GeneCards (Weizmann)DEFB109A
Ensembl hg19 (Hinxton)ENSG00000242296 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242296 [Gene_View]  chr8:12393284-12400365 [Contig_View]  DEFB109A [Vega]
ICGC DataPortalENSG00000242296
TCGA cBioPortalDEFB109A
AceView (NCBI)DEFB109A
Genatlas (Paris)DEFB109A
WikiGenes245912
SOURCE (Princeton)DEFB109A
Genetics Home Reference (NIH)DEFB109A
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB109A  -     chr8:12393284-12400365 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB109A  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB109A - 8p23.1 [CytoView hg19]  DEFB109A - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB109A [Mapview hg19]  DEFB109A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF540981
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB109A
Cluster EST : UnigeneHs.721640 [ NCBI ]
CGAP (NCI)Hs.721640
Alternative Splicing GalleryENSG00000242296
Gene ExpressionDEFB109A [ NCBI-GEO ]   DEFB109A [ EBI - ARRAY_EXPRESS ]   DEFB109A [ SEEK ]   DEFB109A [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB109A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245912
GTEX Portal (Tissue expression)DEFB109A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ30KR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ30KR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ30KR1
Splice isoforms : SwissVarQ30KR1
PhosPhoSitePlusQ30KR1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DEFB109A
DMDM Disease mutations245912
Blocks (Seattle)DEFB109A
SuperfamilyQ30KR1
Human Protein AtlasENSG00000242296
Peptide AtlasQ30KR1
Protein Interaction databases
DIP (DOE-UCLA)Q30KR1
IntAct (EBI)Q30KR1
FunCoupENSG00000242296
BioGRIDDEFB109A
STRING (EMBL)DEFB109A
ZODIACDEFB109A
Ontologies - Pathways
QuickGOQ30KR1
Ontology : AmiGOextracellular region  defense response to bacterium  
Ontology : EGO-EBIextracellular region  defense response to bacterium  
NDEx NetworkDEFB109A
Atlas of Cancer Signalling NetworkDEFB109A
Wikipedia pathwaysDEFB109A
Orthology - Evolution
OrthoDB245912
GeneTree (enSembl)ENSG00000242296
Phylogenetic Trees/Animal Genes : TreeFamDEFB109A
HOVERGENQ30KR1
HOGENOMQ30KR1
Homologs : HomoloGeneDEFB109A
Homology/Alignments : Family Browser (UCSC)DEFB109A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB109A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB109A
dbVarDEFB109A
ClinVarDEFB109A
1000_GenomesDEFB109A 
Exome Variant ServerDEFB109A
ExAC (Exome Aggregation Consortium)DEFB109A (select the gene name)
Genetic variants : HAPMAP245912
Genomic Variants (DGV)DEFB109A [DGVbeta]
DECIPHERDEFB109A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB109A 
Mutations
ICGC Data PortalDEFB109A 
TCGA Data PortalDEFB109A 
Broad Tumor PortalDEFB109A
OASIS PortalDEFB109A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEFB109A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB109A
DgiDB (Drug Gene Interaction Database)DEFB109A
DoCM (Curated mutations)DEFB109A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB109A (select a term)
intoGenDEFB109A
Cancer3DDEFB109A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB109A
Genetic Testing Registry DEFB109A
NextProtQ30KR1 [Medical]
TSGene245912
GENETestsDEFB109A
Target ValidationDEFB109A
Huge Navigator DEFB109A [HugePedia]
snp3D : Map Gene to Disease245912
BioCentury BCIQDEFB109A
ClinGenDEFB109A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245912
Chemical/Pharm GKB GenePA38486
Clinical trialDEFB109A
Miscellaneous
canSAR (ICR)DEFB109A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB109A
EVEXDEFB109A
GoPubMedDEFB109A
iHOPDEFB109A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:03 CEST 2017

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