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DEFB109B (defensin beta 109B)

Identity

Alias_namesDEFB109P1B
defensin, beta 109, pseudogene 1B
defensin beta 109 pseudogene 1B
Other aliasDEF109P1B
DEFB109
HGNC (Hugo) DEFB109B
LocusID (NCBI) 641517
Atlas_Id 79973
Location 8_KI270813v1_alt  [Link to chromosome band 8]
Location_base_pair Starts at 3979 and ends at 11101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DEFB109B   33469
Cards
Entrez_Gene (NCBI)DEFB109B  641517  defensin beta 109B
AliasesDEF109P1B; DEFB109; DEFB109P1B
GeneCards (Weizmann)DEFB109B
Ensembl hg19 (Hinxton)ENSG00000206034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206034 [Gene_View]  chr8_KI270813v1_alt:3979-11101 [Contig_View]  DEFB109B [Vega]
ICGC DataPortalENSG00000206034
TCGA cBioPortalDEFB109B
AceView (NCBI)DEFB109B
Genatlas (Paris)DEFB109B
WikiGenes641517
SOURCE (Princeton)DEFB109B
Genetics Home Reference (NIH)DEFB109B
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB109B  -     chr8_KI270813v1_alt:3979-11101 +  8_KI270813v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB109B  -     8_KI270813v1_alt   [Description]    (hg19-Feb_2009)
EnsemblDEFB109B - 8_KI270813v1_alt [CytoView hg19]  DEFB109B - 8_KI270813v1_alt [CytoView hg38]
Mapping of homologs : NCBIDEFB109B [Mapview hg19]  DEFB109B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC141501 BC148781 DQ012013
RefSeq transcript (Entrez)NM_001037380
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187570
Consensus coding sequences : CCDS (NCBI)DEFB109B
Cluster EST : UnigeneHs.616079 [ NCBI ]
CGAP (NCI)Hs.616079
Alternative Splicing GalleryENSG00000206034
Gene ExpressionDEFB109B [ NCBI-GEO ]   DEFB109B [ EBI - ARRAY_EXPRESS ]   DEFB109B [ SEEK ]   DEFB109B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB109B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)641517
GTEX Portal (Tissue expression)DEFB109B
Human Protein AtlasENSG00000206034-DEFB109B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DEFB109B
DMDM Disease mutations641517
Blocks (Seattle)DEFB109B
Human Protein Atlas [tissue]ENSG00000206034-DEFB109B [tissue]
Protein Interaction databases
FunCoupENSG00000206034
BioGRIDDEFB109B
STRING (EMBL)DEFB109B
ZODIACDEFB109B
Ontologies - Pathways
Huge Navigator DEFB109B [HugePedia]
snp3D : Map Gene to Disease641517
BioCentury BCIQDEFB109B
ClinGenDEFB109B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641517
Clinical trialDEFB109B
Miscellaneous
canSAR (ICR)DEFB109B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB109B
EVEXDEFB109B
GoPubMedDEFB109B
iHOPDEFB109B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:18:03 CET 2017

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