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DEFB109P1 (defensin, beta 109, pseudogene 1)

Identity

Alias_namesDEFB109
defensin, beta 109
defensin, beta 109, pseudogene 1
Alias_symbol (synonym)DEFB-9
DEFB109A
Other alias
HGNC (Hugo) DEFB109P1
LocusID (NCBI) 245912
Atlas_Id 62396
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 12250793 and ends at 12257874 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB109P1   18090
Cards
Entrez_Gene (NCBI)DEFB109P1  245912  defensin, beta 109, pseudogene 1
AliasesDEFB-9; DEFB109; DEFB109A
GeneCards (Weizmann)DEFB109P1
Ensembl hg19 (Hinxton) [Gene_View]  chr8:12250793-12257874 [Contig_View]  DEFB109P1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:12250793-12257874 [Contig_View]  DEFB109P1 [Vega]
TCGA cBioPortalDEFB109P1
AceView (NCBI)DEFB109P1
Genatlas (Paris)DEFB109P1
WikiGenes245912
SOURCE (Princeton)DEFB109P1
Genetics Home Reference (NIH)DEFB109P1
Genomic and cartography
GoldenPath hg19 (UCSC)DEFB109P1  -     chr8:12250793-12257874 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEFB109P1  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblDEFB109P1 - 8p23.1 [CytoView hg19]  DEFB109P1 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB109P1 [Mapview hg19]  DEFB109P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF540981
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NT_167187
Consensus coding sequences : CCDS (NCBI)DEFB109P1
Cluster EST : UnigeneHs.721640 [ NCBI ]
CGAP (NCI)Hs.721640
Gene ExpressionDEFB109P1 [ NCBI-GEO ]   DEFB109P1 [ EBI - ARRAY_EXPRESS ]   DEFB109P1 [ SEEK ]   DEFB109P1 [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB109P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245912
GTEX Portal (Tissue expression)DEFB109P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ30KR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ30KR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ30KR1
Splice isoforms : SwissVarQ30KR1
PhosPhoSitePlusQ30KR1
Domains : Interpro (EBI)Beta_defensin    Defensin_beta/neutrophil   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Domain families : Smart (EMBL)DEFSN (SM00048)  
Conserved Domain (NCBI)DEFB109P1
DMDM Disease mutations245912
Blocks (Seattle)DEFB109P1
SuperfamilyQ30KR1
Peptide AtlasQ30KR1
Protein Interaction databases
DIP (DOE-UCLA)Q30KR1
IntAct (EBI)Q30KR1
BioGRIDDEFB109P1
STRING (EMBL)DEFB109P1
ZODIACDEFB109P1
Ontologies - Pathways
QuickGOQ30KR1
Ontology : AmiGOextracellular region  defense response to bacterium  
Ontology : EGO-EBIextracellular region  defense response to bacterium  
NDEx NetworkDEFB109P1
Atlas of Cancer Signalling NetworkDEFB109P1
Wikipedia pathwaysDEFB109P1
Orthology - Evolution
OrthoDB245912
Phylogenetic Trees/Animal Genes : TreeFamDEFB109P1
HOVERGENQ30KR1
HOGENOMQ30KR1
Homologs : HomoloGeneDEFB109P1
Homology/Alignments : Family Browser (UCSC)DEFB109P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB109P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB109P1
dbVarDEFB109P1
ClinVarDEFB109P1
1000_GenomesDEFB109P1 
Exome Variant ServerDEFB109P1
ExAC (Exome Aggregation Consortium)DEFB109P1 (select the gene name)
Genetic variants : HAPMAP245912
Genomic Variants (DGV)DEFB109P1 [DGVbeta]
DECIPHER (Syndromes)8:12250793-12257874  
CONAN: Copy Number AnalysisDEFB109P1 
Mutations
ICGC Data PortalDEFB109P1 
TCGA Data PortalDEFB109P1 
Broad Tumor PortalDEFB109P1
OASIS PortalDEFB109P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEFB109P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB109P1
DgiDB (Drug Gene Interaction Database)DEFB109P1
DoCM (Curated mutations)DEFB109P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB109P1 (select a term)
intoGenDEFB109P1
Cancer3DDEFB109P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB109P1
Genetic Testing Registry DEFB109P1
NextProtQ30KR1 [Medical]
TSGene245912
GENETestsDEFB109P1
Huge Navigator DEFB109P1 [HugePedia]
snp3D : Map Gene to Disease245912
BioCentury BCIQDEFB109P1
ClinGenDEFB109P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245912
Chemical/Pharm GKB GenePA38486
Clinical trialDEFB109P1
Miscellaneous
canSAR (ICR)DEFB109P1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB109P1
EVEXDEFB109P1
GoPubMedDEFB109P1
iHOPDEFB109P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:22 CET 2017

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