Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DEFB109P1B (defensin, beta 109, pseudogene 1B)

Identity

Alias_namesdefensin, beta 109, pseudogene 1B
Other aliasDEF109P1B
DEFB109
HGNC (Hugo) DEFB109P1B
LocusID (NCBI) 641517
Atlas_Id 62397
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7170366 and ends at 7177470 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB109P1B   33469
Cards
Entrez_Gene (NCBI)DEFB109P1B  641517  defensin, beta 109, pseudogene 1B
AliasesDEF109P1B; DEFB109
GeneCards (Weizmann)DEFB109P1B
Ensembl hg19 (Hinxton)ENSG00000206034 [Gene_View]  chr8:7170366-7177470 [Contig_View]  DEFB109P1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000206034 [Gene_View]  chr8:7170366-7177470 [Contig_View]  DEFB109P1B [Vega]
ICGC DataPortalENSG00000206034
TCGA cBioPortalDEFB109P1B
AceView (NCBI)DEFB109P1B
Genatlas (Paris)DEFB109P1B
WikiGenes641517
SOURCE (Princeton)DEFB109P1B
Genetics Home Reference (NIH)DEFB109P1B
Genomic and cartography
GoldenPath hg19 (UCSC)DEFB109P1B  -     chr8:7170366-7177470 +  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEFB109P1B  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblDEFB109P1B - 8p23.1 [CytoView hg19]  DEFB109P1B - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB109P1B [Mapview hg19]  DEFB109P1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC141501 BC148781 DQ012013
RefSeq transcript (Entrez)NM_001037380
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_023736 NW_004929335
Consensus coding sequences : CCDS (NCBI)DEFB109P1B
Cluster EST : UnigeneHs.616079 [ NCBI ]
CGAP (NCI)Hs.616079
Alternative Splicing GalleryENSG00000206034
Gene ExpressionDEFB109P1B [ NCBI-GEO ]   DEFB109P1B [ EBI - ARRAY_EXPRESS ]   DEFB109P1B [ SEEK ]   DEFB109P1B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB109P1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)641517
GTEX Portal (Tissue expression)DEFB109P1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ30KR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ30KR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ30KR1
Splice isoforms : SwissVarQ30KR1
PhosPhoSitePlusQ30KR1
Domains : Interpro (EBI)Beta_defensin    Defensin_beta/neutrophil   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Domain families : Smart (EMBL)DEFSN (SM00048)  
Conserved Domain (NCBI)DEFB109P1B
DMDM Disease mutations641517
Blocks (Seattle)DEFB109P1B
SuperfamilyQ30KR1
Human Protein AtlasENSG00000206034
Peptide AtlasQ30KR1
Protein Interaction databases
DIP (DOE-UCLA)Q30KR1
IntAct (EBI)Q30KR1
FunCoupENSG00000206034
BioGRIDDEFB109P1B
STRING (EMBL)DEFB109P1B
ZODIACDEFB109P1B
Ontologies - Pathways
QuickGOQ30KR1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDEFB109P1B
Atlas of Cancer Signalling NetworkDEFB109P1B
Wikipedia pathwaysDEFB109P1B
Orthology - Evolution
OrthoDB641517
GeneTree (enSembl)ENSG00000206034
Phylogenetic Trees/Animal Genes : TreeFamDEFB109P1B
HOVERGENQ30KR1
HOGENOMQ30KR1
Homologs : HomoloGeneDEFB109P1B
Homology/Alignments : Family Browser (UCSC)DEFB109P1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB109P1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB109P1B
dbVarDEFB109P1B
ClinVarDEFB109P1B
1000_GenomesDEFB109P1B 
Exome Variant ServerDEFB109P1B
ExAC (Exome Aggregation Consortium)DEFB109P1B (select the gene name)
Genetic variants : HAPMAP641517
Genomic Variants (DGV)DEFB109P1B [DGVbeta]
DECIPHER (Syndromes)8:7170366-7177470  ENSG00000206034
CONAN: Copy Number AnalysisDEFB109P1B 
Mutations
ICGC Data PortalDEFB109P1B 
TCGA Data PortalDEFB109P1B 
Broad Tumor PortalDEFB109P1B
OASIS PortalDEFB109P1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEFB109P1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB109P1B
DgiDB (Drug Gene Interaction Database)DEFB109P1B
DoCM (Curated mutations)DEFB109P1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB109P1B (select a term)
intoGenDEFB109P1B
Cancer3DDEFB109P1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB109P1B
Genetic Testing Registry DEFB109P1B
NextProtQ30KR1 [Medical]
TSGene641517
GENETestsDEFB109P1B
Huge Navigator DEFB109P1B [HugePedia]
snp3D : Map Gene to Disease641517
BioCentury BCIQDEFB109P1B
ClinGenDEFB109P1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641517
Clinical trialDEFB109P1B
Miscellaneous
canSAR (ICR)DEFB109P1B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB109P1B
EVEXDEFB109P1B
GoPubMedDEFB109P1B
iHOPDEFB109P1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:01:22 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.