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DEFB126 (defensin beta 126)

Identity

Alias_namesC20orf8
chromosome 20 open reading frame 8
defensin, beta 126
Alias_symbol (synonym)bA530N10.1
DEFB-26
Other aliasDEFB26
HBD26
hBD-26
HGNC (Hugo) DEFB126
LocusID (NCBI) 81623
Atlas_Id 62412
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 142553 and ends at 145751 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB126   15900
Cards
Entrez_Gene (NCBI)DEFB126  81623  defensin beta 126
AliasesC20orf8; DEFB-26; DEFB26; HBD26; 
bA530N10.1; hBD-26
GeneCards (Weizmann)DEFB126
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:142553-145751 [Contig_View]  DEFB126 [Vega]
TCGA cBioPortalDEFB126
AceView (NCBI)DEFB126
Genatlas (Paris)DEFB126
WikiGenes81623
SOURCE (Princeton)DEFB126
Genetics Home Reference (NIH)DEFB126
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB126  -     chr20:142553-145751 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB126  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblDEFB126 - 20p13 [CytoView hg19]  DEFB126 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIDEFB126 [Mapview hg19]  DEFB126 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA400429 AF525928 AJ236910 AK225987 AY122478
RefSeq transcript (Entrez)NM_030931
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB126
Cluster EST : UnigeneHs.124211 [ NCBI ]
CGAP (NCI)Hs.124211
Gene ExpressionDEFB126 [ NCBI-GEO ]   DEFB126 [ EBI - ARRAY_EXPRESS ]   DEFB126 [ SEEK ]   DEFB126 [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB126 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81623
GTEX Portal (Tissue expression)DEFB126
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYW3
Splice isoforms : SwissVarQ9BYW3
PhosPhoSitePlusQ9BYW3
Domains : Interpro (EBI)Beta_defensin    Beta_defensin_126   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Domain structure : Prodom (Prabi Lyon)Beta_defensin_126 (PD289049)   
Conserved Domain (NCBI)DEFB126
DMDM Disease mutations81623
Blocks (Seattle)DEFB126
SuperfamilyQ9BYW3
Peptide AtlasQ9BYW3
HPRD10876
IPIIPI00307734   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYW3
IntAct (EBI)Q9BYW3
BioGRIDDEFB126
STRING (EMBL)DEFB126
ZODIACDEFB126
Ontologies - Pathways
QuickGOQ9BYW3
Ontology : AmiGOextracellular region  single fertilization  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  single fertilization  defense response to bacterium  innate immune response  
NDEx NetworkDEFB126
Atlas of Cancer Signalling NetworkDEFB126
Wikipedia pathwaysDEFB126
Orthology - Evolution
OrthoDB81623
Phylogenetic Trees/Animal Genes : TreeFamDEFB126
HOVERGENQ9BYW3
HOGENOMQ9BYW3
Homologs : HomoloGeneDEFB126
Homology/Alignments : Family Browser (UCSC)DEFB126
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB126 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB126
dbVarDEFB126
ClinVarDEFB126
1000_GenomesDEFB126 
Exome Variant ServerDEFB126
ExAC (Exome Aggregation Consortium)DEFB126 (select the gene name)
Genetic variants : HAPMAP81623
Genomic Variants (DGV)DEFB126 [DGVbeta]
DECIPHERDEFB126 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB126 
Mutations
ICGC Data PortalDEFB126 
TCGA Data PortalDEFB126 
Broad Tumor PortalDEFB126
OASIS PortalDEFB126 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB126  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB126
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB126
DgiDB (Drug Gene Interaction Database)DEFB126
DoCM (Curated mutations)DEFB126 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB126 (select a term)
intoGenDEFB126
Cancer3DDEFB126(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB126
Genetic Testing Registry DEFB126
NextProtQ9BYW3 [Medical]
TSGene81623
GENETestsDEFB126
Target ValidationDEFB126
Huge Navigator DEFB126 [HugePedia]
snp3D : Map Gene to Disease81623
BioCentury BCIQDEFB126
ClinGenDEFB126
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81623
Chemical/Pharm GKB GenePA27246
Clinical trialDEFB126
Miscellaneous
canSAR (ICR)DEFB126 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB126
EVEXDEFB126
GoPubMedDEFB126
iHOPDEFB126
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:40 CEST 2017

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