Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DEFB131 (defensin, beta 131)

Identity

Alias_namesdefensin, beta 131
Alias_symbol (synonym)DEFB-31
Other alias
HGNC (Hugo) DEFB131
LocusID (NCBI) 644414
Atlas_Id 62417
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9446260 and ends at 9452240 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB131   18108
Cards
Entrez_Gene (NCBI)DEFB131  644414  defensin, beta 131
AliasesDEFB-31
GeneCards (Weizmann)DEFB131
Ensembl hg19 (Hinxton)ENSG00000186146 [Gene_View]  chr4:9446260-9452240 [Contig_View]  DEFB131 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186146 [Gene_View]  chr4:9446260-9452240 [Contig_View]  DEFB131 [Vega]
ICGC DataPortalENSG00000186146
TCGA cBioPortalDEFB131
AceView (NCBI)DEFB131
Genatlas (Paris)DEFB131
WikiGenes644414
SOURCE (Princeton)DEFB131
Genetics Home Reference (NIH)DEFB131
Genomic and cartography
GoldenPath hg19 (UCSC)DEFB131  -     chr4:9446260-9452240 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEFB131  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblDEFB131 - 4p16.1 [CytoView hg19]  DEFB131 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB131 [Mapview hg19]  DEFB131 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF529414 BC160155
RefSeq transcript (Entrez)NM_001040448
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)DEFB131
Cluster EST : UnigeneHs.590200 [ NCBI ]
CGAP (NCI)Hs.590200
Alternative Splicing GalleryENSG00000186146
Gene ExpressionDEFB131 [ NCBI-GEO ]   DEFB131 [ EBI - ARRAY_EXPRESS ]   DEFB131 [ SEEK ]   DEFB131 [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB131 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644414
GTEX Portal (Tissue expression)DEFB131
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59861   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59861  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59861
Splice isoforms : SwissVarP59861
PhosPhoSitePlusP59861
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB131
DMDM Disease mutations644414
Blocks (Seattle)DEFB131
SuperfamilyP59861
Human Protein AtlasENSG00000186146
Peptide AtlasP59861
IPIIPI00739683   
Protein Interaction databases
DIP (DOE-UCLA)P59861
IntAct (EBI)P59861
FunCoupENSG00000186146
BioGRIDDEFB131
STRING (EMBL)DEFB131
ZODIACDEFB131
Ontologies - Pathways
QuickGOP59861
Ontology : AmiGOextracellular region  cell surface  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  cell surface  defense response to bacterium  innate immune response  
NDEx NetworkDEFB131
Atlas of Cancer Signalling NetworkDEFB131
Wikipedia pathwaysDEFB131
Orthology - Evolution
OrthoDB644414
GeneTree (enSembl)ENSG00000186146
Phylogenetic Trees/Animal Genes : TreeFamDEFB131
HOVERGENP59861
HOGENOMP59861
Homologs : HomoloGeneDEFB131
Homology/Alignments : Family Browser (UCSC)DEFB131
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB131 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB131
dbVarDEFB131
ClinVarDEFB131
1000_GenomesDEFB131 
Exome Variant ServerDEFB131
ExAC (Exome Aggregation Consortium)DEFB131 (select the gene name)
Genetic variants : HAPMAP644414
Genomic Variants (DGV)DEFB131 [DGVbeta]
DECIPHER (Syndromes)4:9446260-9452240  ENSG00000186146
CONAN: Copy Number AnalysisDEFB131 
Mutations
ICGC Data PortalDEFB131 
TCGA Data PortalDEFB131 
Broad Tumor PortalDEFB131
OASIS PortalDEFB131 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB131  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB131
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB131
DgiDB (Drug Gene Interaction Database)DEFB131
DoCM (Curated mutations)DEFB131 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB131 (select a term)
intoGenDEFB131
Cancer3DDEFB131(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB131
Genetic Testing Registry DEFB131
NextProtP59861 [Medical]
TSGene644414
GENETestsDEFB131
Huge Navigator DEFB131 [HugePedia]
snp3D : Map Gene to Disease644414
BioCentury BCIQDEFB131
ClinGenDEFB131
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644414
Chemical/Pharm GKB GenePA38504
Clinical trialDEFB131
Miscellaneous
canSAR (ICR)DEFB131 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB131
EVEXDEFB131
GoPubMedDEFB131
iHOPDEFB131
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:01:27 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.