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DEFB134 (defensin, beta 134)

Identity

Alias_namesdefensin, beta 134
Other alias-
HGNC (Hugo) DEFB134
LocusID (NCBI) 613211
Atlas_Id 62420
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11850686 and ends at 11858261 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB134   32399
Cards
Entrez_Gene (NCBI)DEFB134  613211  defensin, beta 134
Aliases
GeneCards (Weizmann)DEFB134
Ensembl hg19 (Hinxton) [Gene_View]  chr8:11850686-11858261 [Contig_View]  DEFB134 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:11850686-11858261 [Contig_View]  DEFB134 [Vega]
TCGA cBioPortalDEFB134
AceView (NCBI)DEFB134
Genatlas (Paris)DEFB134
WikiGenes613211
SOURCE (Princeton)DEFB134
Genetics Home Reference (NIH)DEFB134
Genomic and cartography
GoldenPath hg19 (UCSC)DEFB134  -     chr8:11850686-11858261 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEFB134  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblDEFB134 - 8p23.1 [CytoView hg19]  DEFB134 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB134 [Mapview hg19]  DEFB134 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY621331 BC130461 BC130463 BG191747 BX099413
RefSeq transcript (Entrez)NM_001033019 NM_001302695
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_077531 NW_004929337
Consensus coding sequences : CCDS (NCBI)DEFB134
Cluster EST : UnigeneHs.631852 [ NCBI ]
CGAP (NCI)Hs.631852
Gene ExpressionDEFB134 [ NCBI-GEO ]   DEFB134 [ EBI - ARRAY_EXPRESS ]   DEFB134 [ SEEK ]   DEFB134 [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB134 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)613211
GTEX Portal (Tissue expression)DEFB134
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4QY38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4QY38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4QY38
Splice isoforms : SwissVarQ4QY38
PhosPhoSitePlusQ4QY38
Domains : Interpro (EBI)Beta_defensin   
Domain families : Pfam (Sanger)Defensin_beta_2 (PF13841)   
Domain families : Pfam (NCBI)pfam13841   
Conserved Domain (NCBI)DEFB134
DMDM Disease mutations613211
Blocks (Seattle)DEFB134
SuperfamilyQ4QY38
Peptide AtlasQ4QY38
IPIIPI00607839   IPI00982428   
Protein Interaction databases
DIP (DOE-UCLA)Q4QY38
IntAct (EBI)Q4QY38
BioGRIDDEFB134
STRING (EMBL)DEFB134
ZODIACDEFB134
Ontologies - Pathways
QuickGOQ4QY38
Ontology : AmiGOextracellular region  cell surface  defense response to bacterium  innate immune response  
Ontology : EGO-EBIextracellular region  cell surface  defense response to bacterium  innate immune response  
NDEx NetworkDEFB134
Atlas of Cancer Signalling NetworkDEFB134
Wikipedia pathwaysDEFB134
Orthology - Evolution
OrthoDB613211
Phylogenetic Trees/Animal Genes : TreeFamDEFB134
HOVERGENQ4QY38
HOGENOMQ4QY38
Homologs : HomoloGeneDEFB134
Homology/Alignments : Family Browser (UCSC)DEFB134
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB134 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB134
dbVarDEFB134
ClinVarDEFB134
1000_GenomesDEFB134 
Exome Variant ServerDEFB134
ExAC (Exome Aggregation Consortium)DEFB134 (select the gene name)
Genetic variants : HAPMAP613211
Genomic Variants (DGV)DEFB134 [DGVbeta]
DECIPHER (Syndromes)8:11850686-11858261  
CONAN: Copy Number AnalysisDEFB134 
Mutations
ICGC Data PortalDEFB134 
TCGA Data PortalDEFB134 
Broad Tumor PortalDEFB134
OASIS PortalDEFB134 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB134  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB134
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB134
DgiDB (Drug Gene Interaction Database)DEFB134
DoCM (Curated mutations)DEFB134 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB134 (select a term)
intoGenDEFB134
Cancer3DDEFB134(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB134
Genetic Testing Registry DEFB134
NextProtQ4QY38 [Medical]
TSGene613211
GENETestsDEFB134
Huge Navigator DEFB134 [HugePedia]
snp3D : Map Gene to Disease613211
BioCentury BCIQDEFB134
ClinGenDEFB134
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD613211
Chemical/Pharm GKB GenePA164718735
Clinical trialDEFB134
Miscellaneous
canSAR (ICR)DEFB134 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB134
EVEXDEFB134
GoPubMedDEFB134
iHOPDEFB134
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:01:27 CET 2017

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