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DEFB136 (defensin beta 136)

Identity

Alias_namesdefensin, beta 136
Alias_symbol (synonym)DEFB137
Other alias
HGNC (Hugo) DEFB136
LocusID (NCBI) 613210
Atlas_Id 62422
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11973937 and ends at 11974599 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POLQ (3q13.33) / DEFB136 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB136   34433
Cards
Entrez_Gene (NCBI)DEFB136  613210  defensin beta 136
AliasesDEFB137
GeneCards (Weizmann)DEFB136
Ensembl hg19 (Hinxton)ENSG00000205884 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205884 [Gene_View]  chr8:11973937-11974599 [Contig_View]  DEFB136 [Vega]
ICGC DataPortalENSG00000205884
TCGA cBioPortalDEFB136
AceView (NCBI)DEFB136
Genatlas (Paris)DEFB136
WikiGenes613210
SOURCE (Princeton)DEFB136
Genetics Home Reference (NIH)DEFB136
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB136  -     chr8:11973937-11974599 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB136  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB136 - 8p23.1 [CytoView hg19]  DEFB136 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB136 [Mapview hg19]  DEFB136 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY621333 BC148537 BC153129 DQ012026
RefSeq transcript (Entrez)NM_001033018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB136
Cluster EST : UnigeneHs.558285 [ NCBI ]
CGAP (NCI)Hs.558285
Alternative Splicing GalleryENSG00000205884
Gene ExpressionDEFB136 [ NCBI-GEO ]   DEFB136 [ EBI - ARRAY_EXPRESS ]   DEFB136 [ SEEK ]   DEFB136 [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB136 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)613210
GTEX Portal (Tissue expression)DEFB136
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ30KP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ30KP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ30KP8
Splice isoforms : SwissVarQ30KP8
PhosPhoSitePlusQ30KP8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DEFB136
DMDM Disease mutations613210
Blocks (Seattle)DEFB136
SuperfamilyQ30KP8
Human Protein AtlasENSG00000205884
Peptide AtlasQ30KP8
IPIIPI00607876   
Protein Interaction databases
DIP (DOE-UCLA)Q30KP8
IntAct (EBI)Q30KP8
FunCoupENSG00000205884
BioGRIDDEFB136
STRING (EMBL)DEFB136
ZODIACDEFB136
Ontologies - Pathways
QuickGOQ30KP8
Ontology : AmiGOextracellular region  defense response to bacterium  
Ontology : EGO-EBIextracellular region  defense response to bacterium  
NDEx NetworkDEFB136
Atlas of Cancer Signalling NetworkDEFB136
Wikipedia pathwaysDEFB136
Orthology - Evolution
OrthoDB613210
GeneTree (enSembl)ENSG00000205884
Phylogenetic Trees/Animal Genes : TreeFamDEFB136
HOVERGENQ30KP8
HOGENOMQ30KP8
Homologs : HomoloGeneDEFB136
Homology/Alignments : Family Browser (UCSC)DEFB136
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB136 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB136
dbVarDEFB136
ClinVarDEFB136
1000_GenomesDEFB136 
Exome Variant ServerDEFB136
ExAC (Exome Aggregation Consortium)DEFB136 (select the gene name)
Genetic variants : HAPMAP613210
Genomic Variants (DGV)DEFB136 [DGVbeta]
DECIPHERDEFB136 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB136 
Mutations
ICGC Data PortalDEFB136 
TCGA Data PortalDEFB136 
Broad Tumor PortalDEFB136
OASIS PortalDEFB136 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB136  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB136
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB136
DgiDB (Drug Gene Interaction Database)DEFB136
DoCM (Curated mutations)DEFB136 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB136 (select a term)
intoGenDEFB136
Cancer3DDEFB136(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB136
Genetic Testing Registry DEFB136
NextProtQ30KP8 [Medical]
TSGene613210
GENETestsDEFB136
Target ValidationDEFB136
Huge Navigator DEFB136 [HugePedia]
snp3D : Map Gene to Disease613210
BioCentury BCIQDEFB136
ClinGenDEFB136
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD613210
Chemical/Pharm GKB GenePA165585543
Clinical trialDEFB136
Miscellaneous
canSAR (ICR)DEFB136 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB136
EVEXDEFB136
GoPubMedDEFB136
iHOPDEFB136
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:08 CEST 2017

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