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DEFB4B (defensin beta 4B)

Identity

Alias_namesDEFB4P
defensin, beta 4, pseudogene
defensin, beta 4B
Other alias
HGNC (Hugo) DEFB4B
LocusID (NCBI) 100289462
Atlas_Id 62423
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7414863 and ends at 7416832 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFB4B   30193
Cards
Entrez_Gene (NCBI)DEFB4B  100289462  defensin beta 4B
AliasesDEFB4P
GeneCards (Weizmann)DEFB4B
Ensembl hg19 (Hinxton)ENSG00000177257 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177257 [Gene_View]  chr8:7414863-7416832 [Contig_View]  DEFB4B [Vega]
ICGC DataPortalENSG00000177257
TCGA cBioPortalDEFB4B
AceView (NCBI)DEFB4B
Genatlas (Paris)DEFB4B
WikiGenes100289462
SOURCE (Princeton)DEFB4B
Genetics Home Reference (NIH)DEFB4B
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB4B  -     chr8:7414863-7416832 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB4B  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFB4B - 8p23.1 [CytoView hg19]  DEFB4B - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB4B [Mapview hg19]  DEFB4B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE714502 BE714509
RefSeq transcript (Entrez)NM_001205266
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187570
Consensus coding sequences : CCDS (NCBI)DEFB4B
Cluster EST : UnigeneHs.740237 [ NCBI ]
CGAP (NCI)Hs.740237
Alternative Splicing GalleryENSG00000177257
Gene ExpressionDEFB4B [ NCBI-GEO ]   DEFB4B [ EBI - ARRAY_EXPRESS ]   DEFB4B [ SEEK ]   DEFB4B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100289462
GTEX Portal (Tissue expression)DEFB4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15263   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15263  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15263
Splice isoforms : SwissVarO15263
PhosPhoSitePlusO15263
Domains : Interpro (EBI)Defensin_beta-typ    Defensin_beta/alpha   
Domain families : Pfam (Sanger)Defensin_beta (PF00711)   
Domain families : Pfam (NCBI)pfam00711   
Domain families : Smart (EMBL)DEFSN (SM00048)  
Conserved Domain (NCBI)DEFB4B
DMDM Disease mutations100289462
Blocks (Seattle)DEFB4B
PDB (SRS)1E4Q    1FD3    1FD4    1FQQ   
PDB (PDBSum)1E4Q    1FD3    1FD4    1FQQ   
PDB (IMB)1E4Q    1FD3    1FD4    1FQQ   
PDB (RSDB)1E4Q    1FD3    1FD4    1FQQ   
Structural Biology KnowledgeBase1E4Q    1FD3    1FD4    1FQQ   
SCOP (Structural Classification of Proteins)1E4Q    1FD3    1FD4    1FQQ   
CATH (Classification of proteins structures)1E4Q    1FD3    1FD4    1FQQ   
SuperfamilyO15263
Human Protein AtlasENSG00000177257
Peptide AtlasO15263
IPIIPI00005739   
Protein Interaction databases
DIP (DOE-UCLA)O15263
IntAct (EBI)O15263
FunCoupENSG00000177257
BioGRIDDEFB4B
STRING (EMBL)DEFB4B
ZODIACDEFB4B
Ontologies - Pathways
QuickGOO15263
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDEFB4B
Atlas of Cancer Signalling NetworkDEFB4B
Wikipedia pathwaysDEFB4B
Orthology - Evolution
OrthoDB100289462
GeneTree (enSembl)ENSG00000177257
Phylogenetic Trees/Animal Genes : TreeFamDEFB4B
HOVERGENO15263
HOGENOMO15263
Homologs : HomoloGeneDEFB4B
Homology/Alignments : Family Browser (UCSC)DEFB4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB4B
dbVarDEFB4B
ClinVarDEFB4B
1000_GenomesDEFB4B 
Exome Variant ServerDEFB4B
ExAC (Exome Aggregation Consortium)DEFB4B (select the gene name)
Genetic variants : HAPMAP100289462
Genomic Variants (DGV)DEFB4B [DGVbeta]
DECIPHERDEFB4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB4B 
Mutations
ICGC Data PortalDEFB4B 
TCGA Data PortalDEFB4B 
Broad Tumor PortalDEFB4B
OASIS PortalDEFB4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEFB4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEFB4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB4B
DgiDB (Drug Gene Interaction Database)DEFB4B
DoCM (Curated mutations)DEFB4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB4B (select a term)
intoGenDEFB4B
Cancer3DDEFB4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEFB4B
Genetic Testing Registry DEFB4B
NextProtO15263 [Medical]
TSGene100289462
GENETestsDEFB4B
Target ValidationDEFB4B
Huge Navigator DEFB4B [HugePedia]
snp3D : Map Gene to Disease100289462
BioCentury BCIQDEFB4B
ClinGenDEFB4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100289462
Chemical/Pharm GKB GenePA165585559
Clinical trialDEFB4B
Miscellaneous
canSAR (ICR)DEFB4B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB4B
EVEXDEFB4B
GoPubMedDEFB4B
iHOPDEFB4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:42 CEST 2017

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