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DENND1C (DENN domain containing 1C)

Identity

Alias_namesFAM31C
family with sequence similarity 31, member C
DENN/MADD domain containing 1C
Alias_symbol (synonym)FLJ22757
Other alias
HGNC (Hugo) DENND1C
LocusID (NCBI) 79958
Atlas_Id 62428
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6467204 and ends at 6481808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PEX5 (12p13.31) / DENND1C (19p13.3)TRAF2 (9q34.3) / DENND1C (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DENND1C   26225
Cards
Entrez_Gene (NCBI)DENND1C  79958  DENN domain containing 1C
AliasesFAM31C
GeneCards (Weizmann)DENND1C
Ensembl hg19 (Hinxton)ENSG00000205744 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205744 [Gene_View]  chr19:6467204-6481808 [Contig_View]  DENND1C [Vega]
ICGC DataPortalENSG00000205744
TCGA cBioPortalDENND1C
AceView (NCBI)DENND1C
Genatlas (Paris)DENND1C
WikiGenes79958
SOURCE (Princeton)DENND1C
Genetics Home Reference (NIH)DENND1C
Genomic and cartography
GoldenPath hg38 (UCSC)DENND1C  -     chr19:6467204-6481808 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DENND1C  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblDENND1C - 19p13.3 [CytoView hg19]  DENND1C - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIDENND1C [Mapview hg19]  DENND1C [Mapview hg38]
OMIM613634   
Gene and transcription
Genbank (Entrez)AA521476 AK026410 AK055820 AK225623 AK303226
RefSeq transcript (Entrez)NM_001290331 NM_024898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DENND1C
Cluster EST : UnigeneHs.236449 [ NCBI ]
CGAP (NCI)Hs.236449
Alternative Splicing GalleryENSG00000205744
Gene ExpressionDENND1C [ NCBI-GEO ]   DENND1C [ EBI - ARRAY_EXPRESS ]   DENND1C [ SEEK ]   DENND1C [ MEM ]
Gene Expression Viewer (FireBrowse)DENND1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79958
GTEX Portal (Tissue expression)DENND1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV53
Splice isoforms : SwissVarQ8IV53
PhosPhoSitePlusQ8IV53
Domaine pattern : Prosite (Expaxy)DDENN (PS50947)    DENN (PS50211)    UDENN (PS50946)   
Domains : Interpro (EBI)dDENN_dom    DENN_dom    uDENN_dom   
Domain families : Pfam (Sanger)dDENN (PF03455)    DENN (PF02141)    uDENN (PF03456)   
Domain families : Pfam (NCBI)pfam03455    pfam02141    pfam03456   
Domain families : Smart (EMBL)dDENN (SM00801)  DENN (SM00799)  uDENN (SM00800)  
Conserved Domain (NCBI)DENND1C
DMDM Disease mutations79958
Blocks (Seattle)DENND1C
SuperfamilyQ8IV53
Human Protein AtlasENSG00000205744
Peptide AtlasQ8IV53
HPRD13304
IPIIPI00216878   IPI00643832   IPI00922756   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV53
IntAct (EBI)Q8IV53
FunCoupENSG00000205744
BioGRIDDENND1C
STRING (EMBL)DENND1C
ZODIACDENND1C
Ontologies - Pathways
QuickGOQ8IV53
Ontology : AmiGOcytosol  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  clathrin-coated vesicle  positive regulation of GTPase activity  membrane organization  
Ontology : EGO-EBIcytosol  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  clathrin-coated vesicle  positive regulation of GTPase activity  membrane organization  
NDEx NetworkDENND1C
Atlas of Cancer Signalling NetworkDENND1C
Wikipedia pathwaysDENND1C
Orthology - Evolution
OrthoDB79958
GeneTree (enSembl)ENSG00000205744
Phylogenetic Trees/Animal Genes : TreeFamDENND1C
HOVERGENQ8IV53
HOGENOMQ8IV53
Homologs : HomoloGeneDENND1C
Homology/Alignments : Family Browser (UCSC)DENND1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDENND1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DENND1C
dbVarDENND1C
ClinVarDENND1C
1000_GenomesDENND1C 
Exome Variant ServerDENND1C
ExAC (Exome Aggregation Consortium)DENND1C (select the gene name)
Genetic variants : HAPMAP79958
Genomic Variants (DGV)DENND1C [DGVbeta]
DECIPHERDENND1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDENND1C 
Mutations
ICGC Data PortalDENND1C 
TCGA Data PortalDENND1C 
Broad Tumor PortalDENND1C
OASIS PortalDENND1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDENND1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDENND1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DENND1C
DgiDB (Drug Gene Interaction Database)DENND1C
DoCM (Curated mutations)DENND1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DENND1C (select a term)
intoGenDENND1C
Cancer3DDENND1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613634   
Orphanet
MedgenDENND1C
Genetic Testing Registry DENND1C
NextProtQ8IV53 [Medical]
TSGene79958
GENETestsDENND1C
Target ValidationDENND1C
Huge Navigator DENND1C [HugePedia]
snp3D : Map Gene to Disease79958
BioCentury BCIQDENND1C
ClinGenDENND1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79958
Chemical/Pharm GKB GenePA134893022
Clinical trialDENND1C
Miscellaneous
canSAR (ICR)DENND1C (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDENND1C
EVEXDENND1C
GoPubMedDENND1C
iHOPDENND1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:09 CEST 2017

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