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DENND2C (DENN domain containing 2C)

Identity

Alias_namesDENN/MADD domain containing 2C
Alias_symbol (synonym)FLJ37099
DKFZp686G0351
DKFZp779P1149
dJ1156J9.1
RP5-1156J9.1
Other alias
HGNC (Hugo) DENND2C
LocusID (NCBI) 163259
Atlas_Id 62430
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 114584575 and ends at 114670111 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DENND2C (1p13.2) / AMPD1 (1p13.2)DENND2C (1p13.2) / BCAS2 (1p13.2)DENND2C (1p13.2) / OXNAD1 (3p25.1)
LOC100507412 (-) / DENND2C (1p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DENND2C   24748
Cards
Entrez_Gene (NCBI)DENND2C  163259  DENN domain containing 2C
AliasesdJ1156J9.1
GeneCards (Weizmann)DENND2C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:114584575-114670111 [Contig_View]  DENND2C [Vega]
TCGA cBioPortalDENND2C
AceView (NCBI)DENND2C
Genatlas (Paris)DENND2C
WikiGenes163259
SOURCE (Princeton)DENND2C
Genetics Home Reference (NIH)DENND2C
Genomic and cartography
GoldenPath hg38 (UCSC)DENND2C  -     chr1:114584575-114670111 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DENND2C  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblDENND2C - 1p13.2 [CytoView hg19]  DENND2C - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIDENND2C [Mapview hg19]  DENND2C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094418 AK124287 AK308302 BX647950 BX649075
RefSeq transcript (Entrez)NM_001256404 NM_198459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DENND2C
Cluster EST : UnigeneHs.654928 [ NCBI ]
CGAP (NCI)Hs.654928
Gene ExpressionDENND2C [ NCBI-GEO ]   DENND2C [ EBI - ARRAY_EXPRESS ]   DENND2C [ SEEK ]   DENND2C [ MEM ]
Gene Expression Viewer (FireBrowse)DENND2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163259
GTEX Portal (Tissue expression)DENND2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68D51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68D51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68D51
Splice isoforms : SwissVarQ68D51
PhosPhoSitePlusQ68D51
Domaine pattern : Prosite (Expaxy)DDENN (PS50947)    DENN (PS50211)    UDENN (PS50946)   
Domains : Interpro (EBI)dDENN_dom    DENN_dom    uDENN_dom   
Domain families : Pfam (Sanger)dDENN (PF03455)    DENN (PF02141)    uDENN (PF03456)   
Domain families : Pfam (NCBI)pfam03455    pfam02141    pfam03456   
Domain families : Smart (EMBL)dDENN (SM00801)  DENN (SM00799)  uDENN (SM00800)  
Conserved Domain (NCBI)DENND2C
DMDM Disease mutations163259
Blocks (Seattle)DENND2C
SuperfamilyQ68D51
Peptide AtlasQ68D51
HPRD13425
IPIIPI00470838   IPI00760939   IPI00843872   
Protein Interaction databases
DIP (DOE-UCLA)Q68D51
IntAct (EBI)Q68D51
BioGRIDDENND2C
STRING (EMBL)DENND2C
ZODIACDENND2C
Ontologies - Pathways
QuickGOQ68D51
Ontology : AmiGORab guanyl-nucleotide exchange factor activity  positive regulation of GTPase activity  
Ontology : EGO-EBIRab guanyl-nucleotide exchange factor activity  positive regulation of GTPase activity  
NDEx NetworkDENND2C
Atlas of Cancer Signalling NetworkDENND2C
Wikipedia pathwaysDENND2C
Orthology - Evolution
OrthoDB163259
Phylogenetic Trees/Animal Genes : TreeFamDENND2C
HOVERGENQ68D51
HOGENOMQ68D51
Homologs : HomoloGeneDENND2C
Homology/Alignments : Family Browser (UCSC)DENND2C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDENND2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DENND2C
dbVarDENND2C
ClinVarDENND2C
1000_GenomesDENND2C 
Exome Variant ServerDENND2C
ExAC (Exome Aggregation Consortium)DENND2C (select the gene name)
Genetic variants : HAPMAP163259
Genomic Variants (DGV)DENND2C [DGVbeta]
DECIPHERDENND2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDENND2C 
Mutations
ICGC Data PortalDENND2C 
TCGA Data PortalDENND2C 
Broad Tumor PortalDENND2C
OASIS PortalDENND2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDENND2C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDENND2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DENND2C
DgiDB (Drug Gene Interaction Database)DENND2C
DoCM (Curated mutations)DENND2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DENND2C (select a term)
intoGenDENND2C
Cancer3DDENND2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDENND2C
Genetic Testing Registry DENND2C
NextProtQ68D51 [Medical]
TSGene163259
GENETestsDENND2C
Target ValidationDENND2C
Huge Navigator DENND2C [HugePedia]
snp3D : Map Gene to Disease163259
BioCentury BCIQDENND2C
ClinGenDENND2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163259
Chemical/Pharm GKB GenePA142671985
Clinical trialDENND2C
Miscellaneous
canSAR (ICR)DENND2C (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDENND2C
EVEXDENND2C
GoPubMedDENND2C
iHOPDENND2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:09 CEST 2017

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