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DENND4C (DENN domain containing 4C)

Identity

Alias_namesC9orf55B
C9orf55
chromosome 9 open reading frame 55B
chromosome 9 open reading frame 55
DENN/MADD domain containing 4C
Alias_symbol (synonym)FLJ20686
bA513M16.3
RAB10GEF
Other alias
HGNC (Hugo) DENND4C
LocusID (NCBI) 55667
Atlas_Id 52357
Location 9p22.1  [Link to chromosome band 9p22]
Location_base_pair Starts at 19230490 and ends at 19374268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DENND4C (9p22.1) / DENND4C (9p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DENND4C   26079
Cards
Entrez_Gene (NCBI)DENND4C  55667  DENN domain containing 4C
AliasesC9orf55; C9orf55B; RAB10GEF; bA513M16.3
GeneCards (Weizmann)DENND4C
Ensembl hg19 (Hinxton)ENSG00000137145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137145 [Gene_View]  chr9:19230490-19374268 [Contig_View]  DENND4C [Vega]
ICGC DataPortalENSG00000137145
TCGA cBioPortalDENND4C
AceView (NCBI)DENND4C
Genatlas (Paris)DENND4C
WikiGenes55667
SOURCE (Princeton)DENND4C
Genetics Home Reference (NIH)DENND4C
Genomic and cartography
GoldenPath hg38 (UCSC)DENND4C  -     chr9:19230490-19374268 +  9p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DENND4C  -     9p22.1   [Description]    (hg19-Feb_2009)
EnsemblDENND4C - 9p22.1 [CytoView hg19]  DENND4C - 9p22.1 [CytoView hg38]
Mapping of homologs : NCBIDENND4C [Mapview hg19]  DENND4C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000627 AK000693 AK001046 AK002020 AK025705
RefSeq transcript (Entrez)NM_001330640 NM_017925
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DENND4C
Cluster EST : UnigeneHs.249591 [ NCBI ]
CGAP (NCI)Hs.249591
Alternative Splicing GalleryENSG00000137145
Gene ExpressionDENND4C [ NCBI-GEO ]   DENND4C [ EBI - ARRAY_EXPRESS ]   DENND4C [ SEEK ]   DENND4C [ MEM ]
Gene Expression Viewer (FireBrowse)DENND4C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55667
GTEX Portal (Tissue expression)DENND4C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZ89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZ89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZ89
Splice isoforms : SwissVarQ5VZ89
PhosPhoSitePlusQ5VZ89
Domaine pattern : Prosite (Expaxy)DDENN (PS50947)    DENN (PS50211)    UDENN (PS50946)   
Domains : Interpro (EBI)dDENN_dom    DENN_dom    uDENN_dom   
Domain families : Pfam (Sanger)dDENN (PF03455)    DENN (PF02141)   
Domain families : Pfam (NCBI)pfam03455    pfam02141   
Domain families : Smart (EMBL)dDENN (SM00801)  DENN (SM00799)  
Conserved Domain (NCBI)DENND4C
DMDM Disease mutations55667
Blocks (Seattle)DENND4C
SuperfamilyQ5VZ89
Human Protein AtlasENSG00000137145
Peptide AtlasQ5VZ89
HPRD12927
IPIIPI00746398   IPI00514187   IPI00856026   IPI00386049   IPI00100453   IPI01012937   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZ89
IntAct (EBI)Q5VZ89
FunCoupENSG00000137145
BioGRIDDENND4C
STRING (EMBL)DENND4C
ZODIACDENND4C
Ontologies - Pathways
QuickGOQ5VZ89
Ontology : AmiGOcytosol  cytosol  plasma membrane  protein transport  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  cytoplasmic vesicle membrane  insulin-responsive compartment  cellular response to insulin stimulus  positive regulation of GTPase activity  membrane organization  protein localization to plasma membrane  
Ontology : EGO-EBIcytosol  cytosol  plasma membrane  protein transport  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  cytoplasmic vesicle membrane  insulin-responsive compartment  cellular response to insulin stimulus  positive regulation of GTPase activity  membrane organization  protein localization to plasma membrane  
NDEx NetworkDENND4C
Atlas of Cancer Signalling NetworkDENND4C
Wikipedia pathwaysDENND4C
Orthology - Evolution
OrthoDB55667
GeneTree (enSembl)ENSG00000137145
Phylogenetic Trees/Animal Genes : TreeFamDENND4C
HOVERGENQ5VZ89
HOGENOMQ5VZ89
Homologs : HomoloGeneDENND4C
Homology/Alignments : Family Browser (UCSC)DENND4C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDENND4C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DENND4C
dbVarDENND4C
ClinVarDENND4C
1000_GenomesDENND4C 
Exome Variant ServerDENND4C
ExAC (Exome Aggregation Consortium)DENND4C (select the gene name)
Genetic variants : HAPMAP55667
Genomic Variants (DGV)DENND4C [DGVbeta]
DECIPHERDENND4C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDENND4C 
Mutations
ICGC Data PortalDENND4C 
TCGA Data PortalDENND4C 
Broad Tumor PortalDENND4C
OASIS PortalDENND4C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDENND4C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDENND4C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DENND4C
DgiDB (Drug Gene Interaction Database)DENND4C
DoCM (Curated mutations)DENND4C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DENND4C (select a term)
intoGenDENND4C
Cancer3DDENND4C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDENND4C
Genetic Testing Registry DENND4C
NextProtQ5VZ89 [Medical]
TSGene55667
GENETestsDENND4C
Target ValidationDENND4C
Huge Navigator DENND4C [HugePedia]
snp3D : Map Gene to Disease55667
BioCentury BCIQDENND4C
ClinGenDENND4C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55667
Chemical/Pharm GKB GenePA134939495
Clinical trialDENND4C
Miscellaneous
canSAR (ICR)DENND4C (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDENND4C
EVEXDENND4C
GoPubMedDENND4C
iHOPDENND4C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:30:59 CEST 2017

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