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DEPDC4 (DEP domain containing 4)

Identity

Alias_symbol (synonym)DEP.4
FLJ33505
Other alias
HGNC (Hugo) DEPDC4
LocusID (NCBI) 120863
Atlas_Id 62439
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 100646042 and ends at 100660857 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UHRF1BP1L (12q23.1) / DEPDC4 (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEPDC4   22952
Cards
Entrez_Gene (NCBI)DEPDC4  120863  DEP domain containing 4
AliasesDEP.4
GeneCards (Weizmann)DEPDC4
Ensembl hg19 (Hinxton)ENSG00000166153 [Gene_View]  chr12:100646042-100660857 [Contig_View]  DEPDC4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166153 [Gene_View]  chr12:100646042-100660857 [Contig_View]  DEPDC4 [Vega]
ICGC DataPortalENSG00000166153
TCGA cBioPortalDEPDC4
AceView (NCBI)DEPDC4
Genatlas (Paris)DEPDC4
WikiGenes120863
SOURCE (Princeton)DEPDC4
Genetics Home Reference (NIH)DEPDC4
Genomic and cartography
GoldenPath hg19 (UCSC)DEPDC4  -     chr12:100646042-100660857 -  12q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEPDC4  -     12q23.1   [Description]    (hg38-Dec_2013)
EnsemblDEPDC4 - 12q23.1 [CytoView hg19]  DEPDC4 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBIDEPDC4 [Mapview hg19]  DEPDC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090824 BC015117 BC039480 BC100927 BC100928
RefSeq transcript (Entrez)NM_152317
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)DEPDC4
Cluster EST : UnigeneHs.653118 [ NCBI ]
CGAP (NCI)Hs.653118
Alternative Splicing GalleryENSG00000166153
Gene ExpressionDEPDC4 [ NCBI-GEO ]   DEPDC4 [ EBI - ARRAY_EXPRESS ]   DEPDC4 [ SEEK ]   DEPDC4 [ MEM ]
Gene Expression Viewer (FireBrowse)DEPDC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120863
GTEX Portal (Tissue expression)DEPDC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2C3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2C3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2C3
Splice isoforms : SwissVarQ8N2C3
PhosPhoSitePlusQ8N2C3
Domaine pattern : Prosite (Expaxy)DEP (PS50186)   
Domains : Interpro (EBI)DEP_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)DEP (PF00610)   
Domain families : Pfam (NCBI)pfam00610   
Domain families : Smart (EMBL)DEP (SM00049)  
Conserved Domain (NCBI)DEPDC4
DMDM Disease mutations120863
Blocks (Seattle)DEPDC4
SuperfamilyQ8N2C3
Human Protein AtlasENSG00000166153
Peptide AtlasQ8N2C3
HPRD13136
IPIIPI00166375   IPI00640879   IPI00651670   IPI00942824   IPI01022160   IPI01022984   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2C3
IntAct (EBI)Q8N2C3
FunCoupENSG00000166153
BioGRIDDEPDC4
STRING (EMBL)DEPDC4
ZODIACDEPDC4
Ontologies - Pathways
QuickGOQ8N2C3
Ontology : AmiGOintracellular  intracellular signal transduction  
Ontology : EGO-EBIintracellular  intracellular signal transduction  
NDEx NetworkDEPDC4
Atlas of Cancer Signalling NetworkDEPDC4
Wikipedia pathwaysDEPDC4
Orthology - Evolution
OrthoDB120863
GeneTree (enSembl)ENSG00000166153
Phylogenetic Trees/Animal Genes : TreeFamDEPDC4
HOVERGENQ8N2C3
HOGENOMQ8N2C3
Homologs : HomoloGeneDEPDC4
Homology/Alignments : Family Browser (UCSC)DEPDC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEPDC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEPDC4
dbVarDEPDC4
ClinVarDEPDC4
1000_GenomesDEPDC4 
Exome Variant ServerDEPDC4
ExAC (Exome Aggregation Consortium)DEPDC4 (select the gene name)
Genetic variants : HAPMAP120863
Genomic Variants (DGV)DEPDC4 [DGVbeta]
DECIPHER (Syndromes)12:100646042-100660857  ENSG00000166153
CONAN: Copy Number AnalysisDEPDC4 
Mutations
ICGC Data PortalDEPDC4 
TCGA Data PortalDEPDC4 
Broad Tumor PortalDEPDC4
OASIS PortalDEPDC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEPDC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEPDC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEPDC4
DgiDB (Drug Gene Interaction Database)DEPDC4
DoCM (Curated mutations)DEPDC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEPDC4 (select a term)
intoGenDEPDC4
Cancer3DDEPDC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDEPDC4
Genetic Testing Registry DEPDC4
NextProtQ8N2C3 [Medical]
TSGene120863
GENETestsDEPDC4
Huge Navigator DEPDC4 [HugePedia]
snp3D : Map Gene to Disease120863
BioCentury BCIQDEPDC4
ClinGenDEPDC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120863
Chemical/Pharm GKB GenePA134981607
Clinical trialDEPDC4
Miscellaneous
canSAR (ICR)DEPDC4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEPDC4
EVEXDEPDC4
GoPubMedDEPDC4
iHOPDEPDC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:31 CET 2017

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