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DEPDC7 (DEP domain containing 7)

Identity

Alias (NCBI)TR2
dJ85M6.4
HGNC (Hugo) DEPDC7
LocusID (NCBI) 91614
Atlas_Id 57412
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 33016182 and ends at 33033582 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DEPDC7   29899
Cards
Entrez_Gene (NCBI)DEPDC7    DEP domain containing 7
AliasesTR2; dJ85M6.4
GeneCards (Weizmann)DEPDC7
Ensembl hg19 (Hinxton)ENSG00000121690 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121690 [Gene_View]  ENSG00000121690 [Sequence]  chr11:33016182-33033582 [Contig_View]  DEPDC7 [Vega]
ICGC DataPortalENSG00000121690
TCGA cBioPortalDEPDC7
AceView (NCBI)DEPDC7
Genatlas (Paris)DEPDC7
SOURCE (Princeton)DEPDC7
Genetics Home Reference (NIH)DEPDC7
Genomic and cartography
GoldenPath hg38 (UCSC)DEPDC7  -     chr11:33016182-33033582 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEPDC7  -     11p13   [Description]    (hg19-Feb_2009)
GoldenPathDEPDC7 - 11p13 [CytoView hg19]  DEPDC7 - 11p13 [CytoView hg38]
ImmunoBaseENSG00000121690
Genome Data Viewer NCBIDEPDC7 [Mapview hg19]  
OMIM612294   
Gene and transcription
Genbank (Entrez)AF447588 AJ245600 AK294934 AK295960 BC011446
RefSeq transcript (Entrez)NM_001077242 NM_139160
Consensus coding sequences : CCDS (NCBI)DEPDC7
Gene ExpressionDEPDC7 [ NCBI-GEO ]   DEPDC7 [ EBI - ARRAY_EXPRESS ]   DEPDC7 [ SEEK ]   DEPDC7 [ MEM ]
Gene Expression Viewer (FireBrowse)DEPDC7 [ Firebrowse - Broad ]
GenevisibleExpression of DEPDC7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91614
GTEX Portal (Tissue expression)DEPDC7
Human Protein AtlasENSG00000121690-DEPDC7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QD5
PhosPhoSitePlusQ96QD5
Domaine pattern : Prosite (Expaxy)DEP (PS50186)   
Domains : Interpro (EBI)DEP_dom    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)DEP (PF00610)   
Domain families : Pfam (NCBI)pfam00610   
Domain families : Smart (EMBL)DEP (SM00049)  
Conserved Domain (NCBI)DEPDC7
SuperfamilyQ96QD5
AlphaFold pdb e-kbQ96QD5   
Human Protein Atlas [tissue]ENSG00000121690-DEPDC7 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96QD5
IntAct (EBI)Q96QD5
BioGRIDDEPDC7
STRING (EMBL)DEPDC7
ZODIACDEPDC7
Ontologies - Pathways
QuickGOQ96QD5
Ontology : AmiGOmolecular_function  cellular_component  cytosol  biological_process  intracellular signal transduction  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBImolecular_function  cellular_component  cytosol  biological_process  intracellular signal transduction  regulation of small GTPase mediated signal transduction  
NDEx NetworkDEPDC7
Atlas of Cancer Signalling NetworkDEPDC7
Wikipedia pathwaysDEPDC7
Orthology - Evolution
OrthoDB91614
GeneTree (enSembl)ENSG00000121690
Phylogenetic Trees/Animal Genes : TreeFamDEPDC7
Homologs : HomoloGeneDEPDC7
Homology/Alignments : Family Browser (UCSC)DEPDC7
Gene fusions - Rearrangements
Fusion : QuiverDEPDC7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEPDC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEPDC7
dbVarDEPDC7
ClinVarDEPDC7
MonarchDEPDC7
1000_GenomesDEPDC7 
Exome Variant ServerDEPDC7
GNOMAD BrowserENSG00000121690
Varsome BrowserDEPDC7
ACMGDEPDC7 variants
VarityQ96QD5
Genomic Variants (DGV)DEPDC7 [DGVbeta]
DECIPHERDEPDC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEPDC7 
Mutations
ICGC Data PortalDEPDC7 
TCGA Data PortalDEPDC7 
Broad Tumor PortalDEPDC7
OASIS PortalDEPDC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEPDC7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDEPDC7
Mutations and Diseases : HGMDDEPDC7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDEPDC7
DgiDB (Drug Gene Interaction Database)DEPDC7
DoCM (Curated mutations)DEPDC7
CIViC (Clinical Interpretations of Variants in Cancer)DEPDC7
Cancer3DDEPDC7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612294   
Orphanet
DisGeNETDEPDC7
MedgenDEPDC7
Genetic Testing Registry DEPDC7
NextProtQ96QD5 [Medical]
GENETestsDEPDC7
Target ValidationDEPDC7
Huge Navigator DEPDC7 [HugePedia]
ClinGenDEPDC7
Clinical trials, drugs, therapy
MyCancerGenomeDEPDC7
Protein Interactions : CTDDEPDC7
Pharm GKB GenePA144596441
PharosQ96QD5
Clinical trialDEPDC7
Miscellaneous
canSAR (ICR)DEPDC7
HarmonizomeDEPDC7
DataMed IndexDEPDC7
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDEPDC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:06:33 CEST 2021

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