Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DEPDC7 (DEP domain containing 7)

Identity

Other aliasTR2
dJ85M6.4
HGNC (Hugo) DEPDC7
LocusID (NCBI) 91614
Atlas_Id 62440
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 33037410 and ends at 33055128 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEPDC7   29899
Cards
Entrez_Gene (NCBI)DEPDC7  91614  DEP domain containing 7
AliasesTR2; dJ85M6.4
GeneCards (Weizmann)DEPDC7
Ensembl hg19 (Hinxton)ENSG00000121690 [Gene_View]  chr11:33037410-33055128 [Contig_View]  DEPDC7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121690 [Gene_View]  chr11:33037410-33055128 [Contig_View]  DEPDC7 [Vega]
ICGC DataPortalENSG00000121690
TCGA cBioPortalDEPDC7
AceView (NCBI)DEPDC7
Genatlas (Paris)DEPDC7
WikiGenes91614
SOURCE (Princeton)DEPDC7
Genetics Home Reference (NIH)DEPDC7
Genomic and cartography
GoldenPath hg19 (UCSC)DEPDC7  -     chr11:33037410-33055128 +  11p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DEPDC7  -     11p13   [Description]    (hg38-Dec_2013)
EnsemblDEPDC7 - 11p13 [CytoView hg19]  DEPDC7 - 11p13 [CytoView hg38]
Mapping of homologs : NCBIDEPDC7 [Mapview hg19]  DEPDC7 [Mapview hg38]
OMIM612294   
Gene and transcription
Genbank (Entrez)AF447588 AJ245600 AK294934 AK295960 BC011446
RefSeq transcript (Entrez)NM_001077242 NM_139160
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)DEPDC7
Cluster EST : UnigeneHs.280990 [ NCBI ]
CGAP (NCI)Hs.280990
Alternative Splicing GalleryENSG00000121690
Gene ExpressionDEPDC7 [ NCBI-GEO ]   DEPDC7 [ EBI - ARRAY_EXPRESS ]   DEPDC7 [ SEEK ]   DEPDC7 [ MEM ]
Gene Expression Viewer (FireBrowse)DEPDC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91614
GTEX Portal (Tissue expression)DEPDC7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QD5
Splice isoforms : SwissVarQ96QD5
PhosPhoSitePlusQ96QD5
Domaine pattern : Prosite (Expaxy)DEP (PS50186)   
Domains : Interpro (EBI)DEP_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)DEP (PF00610)   
Domain families : Pfam (NCBI)pfam00610   
Domain families : Smart (EMBL)DEP (SM00049)  
Conserved Domain (NCBI)DEPDC7
DMDM Disease mutations91614
Blocks (Seattle)DEPDC7
SuperfamilyQ96QD5
Human Protein AtlasENSG00000121690
Peptide AtlasQ96QD5
HPRD11280
IPIIPI00163266   IPI00168463   IPI00909479   IPI00910954   
Protein Interaction databases
DIP (DOE-UCLA)Q96QD5
IntAct (EBI)Q96QD5
FunCoupENSG00000121690
BioGRIDDEPDC7
STRING (EMBL)DEPDC7
ZODIACDEPDC7
Ontologies - Pathways
QuickGOQ96QD5
Ontology : AmiGOmolecular_function  cellular_component  cytosol  small GTPase mediated signal transduction  biological_process  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBImolecular_function  cellular_component  cytosol  small GTPase mediated signal transduction  biological_process  regulation of small GTPase mediated signal transduction  
NDEx NetworkDEPDC7
Atlas of Cancer Signalling NetworkDEPDC7
Wikipedia pathwaysDEPDC7
Orthology - Evolution
OrthoDB91614
GeneTree (enSembl)ENSG00000121690
Phylogenetic Trees/Animal Genes : TreeFamDEPDC7
HOVERGENQ96QD5
HOGENOMQ96QD5
Homologs : HomoloGeneDEPDC7
Homology/Alignments : Family Browser (UCSC)DEPDC7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEPDC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEPDC7
dbVarDEPDC7
ClinVarDEPDC7
1000_GenomesDEPDC7 
Exome Variant ServerDEPDC7
ExAC (Exome Aggregation Consortium)DEPDC7 (select the gene name)
Genetic variants : HAPMAP91614
Genomic Variants (DGV)DEPDC7 [DGVbeta]
DECIPHER (Syndromes)11:33037410-33055128  ENSG00000121690
CONAN: Copy Number AnalysisDEPDC7 
Mutations
ICGC Data PortalDEPDC7 
TCGA Data PortalDEPDC7 
Broad Tumor PortalDEPDC7
OASIS PortalDEPDC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEPDC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEPDC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEPDC7
DgiDB (Drug Gene Interaction Database)DEPDC7
DoCM (Curated mutations)DEPDC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEPDC7 (select a term)
intoGenDEPDC7
Cancer3DDEPDC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612294   
Orphanet
MedgenDEPDC7
Genetic Testing Registry DEPDC7
NextProtQ96QD5 [Medical]
TSGene91614
GENETestsDEPDC7
Huge Navigator DEPDC7 [HugePedia]
snp3D : Map Gene to Disease91614
BioCentury BCIQDEPDC7
ClinGenDEPDC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91614
Chemical/Pharm GKB GenePA144596441
Clinical trialDEPDC7
Miscellaneous
canSAR (ICR)DEPDC7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEPDC7
EVEXDEPDC7
GoPubMedDEPDC7
iHOPDEPDC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:01:31 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.