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DEPP1 (DEPP1, autophagy regulator)

Identity

Other aliasC10orf10
DEPP
FIG
Fseg
HGNC (Hugo) DEPP1
LocusID (NCBI) 11067
Atlas_Id 57240
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 44976261 and ends at 44978882 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DEPP1   23355
Cards
Entrez_Gene (NCBI)DEPP1  11067  DEPP1, autophagy regulator
AliasesC10orf10; DEPP; FIG; Fseg
GeneCards (Weizmann)DEPP1
Ensembl hg19 (Hinxton)ENSG00000165507 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165507 [Gene_View]  ENSG00000165507 [Sequence]  chr10:44976261-44978882 [Contig_View]  DEPP1 [Vega]
ICGC DataPortalENSG00000165507
TCGA cBioPortalDEPP1
AceView (NCBI)DEPP1
Genatlas (Paris)DEPP1
WikiGenes11067
SOURCE (Princeton)DEPP1
Genetics Home Reference (NIH)DEPP1
Genomic and cartography
GoldenPath hg38 (UCSC)DEPP1  -     chr10:44976261-44978882 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEPP1  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblDEPP1 - 10q11.21 [CytoView hg19]  DEPP1 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIDEPP1 [Mapview hg19]  DEPP1 [Mapview hg38]
OMIM611309   
Gene and transcription
Genbank (Entrez)AB022718 AB025244 AK002191 AK098476 AK300839
RefSeq transcript (Entrez)NM_007021
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEPP1
Cluster EST : UnigeneHs.93675 [ NCBI ]
CGAP (NCI)Hs.93675
Alternative Splicing GalleryENSG00000165507
Gene ExpressionDEPP1 [ NCBI-GEO ]   DEPP1 [ EBI - ARRAY_EXPRESS ]   DEPP1 [ SEEK ]   DEPP1 [ MEM ]
Gene Expression Viewer (FireBrowse)DEPP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11067
GTEX Portal (Tissue expression)DEPP1
Human Protein AtlasENSG00000165507-DEPP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTK1
Splice isoforms : SwissVarQ9NTK1
PhosPhoSitePlusQ9NTK1
Domains : Interpro (EBI)DEPP   
Domain families : Pfam (Sanger)DEPP (PF15343)   
Domain families : Pfam (NCBI)pfam15343   
Domain structure : Prodom (Prabi Lyon)DEPP (PD209750)   
Conserved Domain (NCBI)DEPP1
DMDM Disease mutations11067
Blocks (Seattle)DEPP1
SuperfamilyQ9NTK1
Human Protein Atlas [tissue]ENSG00000165507-DEPP1 [tissue]
Peptide AtlasQ9NTK1
IPIIPI00550786   IPI00645183   IPI00942438   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTK1
IntAct (EBI)Q9NTK1
FunCoupENSG00000165507
BioGRIDDEPP1
STRING (EMBL)DEPP1
ZODIACDEPP1
Ontologies - Pathways
QuickGOQ9NTK1
Ontology : AmiGOcytoplasm  mitochondrion  peroxisome  autophagy  regulation of autophagy  
Ontology : EGO-EBIcytoplasm  mitochondrion  peroxisome  autophagy  regulation of autophagy  
NDEx NetworkDEPP1
Atlas of Cancer Signalling NetworkDEPP1
Wikipedia pathwaysDEPP1
Orthology - Evolution
OrthoDB11067
GeneTree (enSembl)ENSG00000165507
Phylogenetic Trees/Animal Genes : TreeFamDEPP1
HOVERGENQ9NTK1
HOGENOMQ9NTK1
Homologs : HomoloGeneDEPP1
Homology/Alignments : Family Browser (UCSC)DEPP1
Gene fusions - Rearrangements
Fusion : QuiverDEPP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEPP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEPP1
dbVarDEPP1
ClinVarDEPP1
1000_GenomesDEPP1 
Exome Variant ServerDEPP1
ExAC (Exome Aggregation Consortium)ENSG00000165507
GNOMAD BrowserENSG00000165507
Varsome BrowserDEPP1
Genetic variants : HAPMAP11067
Genomic Variants (DGV)DEPP1 [DGVbeta]
DECIPHERDEPP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEPP1 
Mutations
ICGC Data PortalDEPP1 
TCGA Data PortalDEPP1 
Broad Tumor PortalDEPP1
OASIS PortalDEPP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEPP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEPP1
DgiDB (Drug Gene Interaction Database)DEPP1
DoCM (Curated mutations)DEPP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEPP1 (select a term)
intoGenDEPP1
Cancer3DDEPP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611309   
Orphanet
DisGeNETDEPP1
MedgenDEPP1
Genetic Testing Registry DEPP1
NextProtQ9NTK1 [Medical]
TSGene11067
GENETestsDEPP1
Target ValidationDEPP1
Huge Navigator DEPP1 [HugePedia]
snp3D : Map Gene to Disease11067
BioCentury BCIQDEPP1
ClinGenDEPP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11067
Chemical/Pharm GKB GenePA128394583
Clinical trialDEPP1
Miscellaneous
canSAR (ICR)DEPP1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEPP1
EVEXDEPP1
GoPubMedDEPP1
iHOPDEPP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:02:12 CET 2018

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