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DERA (deoxyribose-phosphate aldolase (putative))

Identity

Alias_names2-deoxyribose-5-phosphate aldolase homolog (C. elegans)
Alias_symbol (synonym)CGI-26
DEOC
Other alias
HGNC (Hugo) DERA
LocusID (NCBI) 51071
Atlas_Id 62441
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 16064106 and ends at 16190315 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DERA (12p12.3) / LRP6 (12p13.2)PBX2 (6p21.32) / DERA (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DERA   24269
Cards
Entrez_Gene (NCBI)DERA  51071  deoxyribose-phosphate aldolase (putative)
AliasesCGI-26; DEOC
GeneCards (Weizmann)DERA
Ensembl hg19 (Hinxton)ENSG00000023697 [Gene_View]  chr12:16064106-16190315 [Contig_View]  DERA [Vega]
Ensembl hg38 (Hinxton)ENSG00000023697 [Gene_View]  chr12:16064106-16190315 [Contig_View]  DERA [Vega]
ICGC DataPortalENSG00000023697
TCGA cBioPortalDERA
AceView (NCBI)DERA
Genatlas (Paris)DERA
WikiGenes51071
SOURCE (Princeton)DERA
Genetics Home Reference (NIH)DERA
Genomic and cartography
GoldenPath hg19 (UCSC)DERA  -     chr12:16064106-16190315 +  12p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DERA  -     12p12.3   [Description]    (hg38-Dec_2013)
EnsemblDERA - 12p12.3 [CytoView hg19]  DERA - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBIDERA [Mapview hg19]  DERA [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF132960 AK024614 AK222541 AK296697 AK309182
RefSeq transcript (Entrez)NM_001300779 NM_015954
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)DERA
Cluster EST : UnigeneHs.39429 [ NCBI ]
CGAP (NCI)Hs.39429
Alternative Splicing GalleryENSG00000023697
Gene ExpressionDERA [ NCBI-GEO ]   DERA [ EBI - ARRAY_EXPRESS ]   DERA [ SEEK ]   DERA [ MEM ]
Gene Expression Viewer (FireBrowse)DERA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51071
GTEX Portal (Tissue expression)DERA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y315   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y315  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y315
Splice isoforms : SwissVarQ9Y315
PhosPhoSitePlusQ9Y315
Domains : Interpro (EBI)Aldolase_TIM    DeoC    DeoC/FbaB/lacD_aldolase   
Domain families : Pfam (Sanger)DeoC (PF01791)   
Domain families : Pfam (NCBI)pfam01791   
Conserved Domain (NCBI)DERA
DMDM Disease mutations51071
Blocks (Seattle)DERA
SuperfamilyQ9Y315
Human Protein AtlasENSG00000023697
Peptide AtlasQ9Y315
HPRD13138
IPIIPI00219677   IPI00791500   IPI00978525   IPI00792937   IPI00982485   IPI00979763   IPI00789397   IPI00984807   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y315
IntAct (EBI)Q9Y315
FunCoupENSG00000023697
BioGRIDDERA
STRING (EMBL)DERA
ZODIACDERA
Ontologies - Pathways
QuickGOQ9Y315
Ontology : AmiGOdeoxyribose-phosphate aldolase activity  nucleus  cytoplasm  deoxyribonucleotide catabolic process  carbohydrate catabolic process  deoxyribonucleoside catabolic process  deoxyribose phosphate catabolic process  extracellular exosome  
Ontology : EGO-EBIdeoxyribose-phosphate aldolase activity  nucleus  cytoplasm  deoxyribonucleotide catabolic process  carbohydrate catabolic process  deoxyribonucleoside catabolic process  deoxyribose phosphate catabolic process  extracellular exosome  
Pathways : KEGGPentose phosphate pathway   
NDEx NetworkDERA
Atlas of Cancer Signalling NetworkDERA
Wikipedia pathwaysDERA
Orthology - Evolution
OrthoDB51071
GeneTree (enSembl)ENSG00000023697
Phylogenetic Trees/Animal Genes : TreeFamDERA
HOVERGENQ9Y315
HOGENOMQ9Y315
Homologs : HomoloGeneDERA
Homology/Alignments : Family Browser (UCSC)DERA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDERA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DERA
dbVarDERA
ClinVarDERA
1000_GenomesDERA 
Exome Variant ServerDERA
ExAC (Exome Aggregation Consortium)DERA (select the gene name)
Genetic variants : HAPMAP51071
Genomic Variants (DGV)DERA [DGVbeta]
DECIPHER (Syndromes)12:16064106-16190315  ENSG00000023697
CONAN: Copy Number AnalysisDERA 
Mutations
ICGC Data PortalDERA 
TCGA Data PortalDERA 
Broad Tumor PortalDERA
OASIS PortalDERA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDERA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDERA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DERA
DgiDB (Drug Gene Interaction Database)DERA
DoCM (Curated mutations)DERA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DERA (select a term)
intoGenDERA
Cancer3DDERA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDERA
Genetic Testing Registry DERA
NextProtQ9Y315 [Medical]
TSGene51071
GENETestsDERA
Huge Navigator DERA [HugePedia]
snp3D : Map Gene to Disease51071
BioCentury BCIQDERA
ClinGenDERA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51071
Chemical/Pharm GKB GenePA134943367
Clinical trialDERA
Miscellaneous
canSAR (ICR)DERA (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDERA
EVEXDERA
GoPubMedDERA
iHOPDERA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:31 CET 2017

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