Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DERL3 (derlin 3)

Identity

Alias_namesC22orf14
chromosome 22 open reading frame 14
Der1-like domain family, member 3
Alias_symbol (synonym)FLJ43842
MGC71803
derlin-3
IZP6
Other aliasLLN2
HGNC (Hugo) DERL3
LocusID (NCBI) 91319
Atlas_Id 62442
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 24176690 and ends at 24181199 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DERL3   14236
Cards
Entrez_Gene (NCBI)DERL3  91319  derlin 3
AliasesC22orf14; IZP6; LLN2; derlin-3
GeneCards (Weizmann)DERL3
Ensembl hg19 (Hinxton)ENSG00000099958 [Gene_View]  chr22:24176690-24181199 [Contig_View]  DERL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000099958 [Gene_View]  chr22:24176690-24181199 [Contig_View]  DERL3 [Vega]
ICGC DataPortalENSG00000099958
TCGA cBioPortalDERL3
AceView (NCBI)DERL3
Genatlas (Paris)DERL3
WikiGenes91319
SOURCE (Princeton)DERL3
Genetics Home Reference (NIH)DERL3
Genomic and cartography
GoldenPath hg19 (UCSC)DERL3  -     chr22:24176690-24181199 -  22q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DERL3  -     22q11.23   [Description]    (hg38-Dec_2013)
EnsemblDERL3 - 22q11.23 [CytoView hg19]  DERL3 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIDERL3 [Mapview hg19]  DERL3 [Mapview hg38]
OMIM610305   
Gene and transcription
Genbank (Entrez)AA985493 AK092582 AK096976 AK125830 AL389876
RefSeq transcript (Entrez)NM_001002862 NM_001135751 NM_198440
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NT_187633 NW_004929430
Consensus coding sequences : CCDS (NCBI)DERL3
Cluster EST : UnigeneHs.593679 [ NCBI ]
CGAP (NCI)Hs.593679
Alternative Splicing GalleryENSG00000099958
Gene ExpressionDERL3 [ NCBI-GEO ]   DERL3 [ EBI - ARRAY_EXPRESS ]   DERL3 [ SEEK ]   DERL3 [ MEM ]
Gene Expression Viewer (FireBrowse)DERL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91319
GTEX Portal (Tissue expression)DERL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q80
Splice isoforms : SwissVarQ96Q80
PhosPhoSitePlusQ96Q80
Domains : Interpro (EBI)DER1   
Domain families : Pfam (Sanger)DER1 (PF04511)   
Domain families : Pfam (NCBI)pfam04511   
Conserved Domain (NCBI)DERL3
DMDM Disease mutations91319
Blocks (Seattle)DERL3
SuperfamilyQ96Q80
Human Protein AtlasENSG00000099958
Peptide AtlasQ96Q80
HPRD13139
IPIIPI00430406   IPI00430407   IPI00430408   IPI00430409   IPI00878606   IPI00167442   
Protein Interaction databases
DIP (DOE-UCLA)Q96Q80
IntAct (EBI)Q96Q80
FunCoupENSG00000099958
BioGRIDDERL3
STRING (EMBL)DERL3
ZODIACDERL3
Ontologies - Pathways
QuickGOQ96Q80
Ontology : AmiGOprotein binding  protein N-linked glycosylation via asparagine  integral component of endoplasmic reticulum membrane  ER-associated ubiquitin-dependent protein catabolic process  ER-associated ubiquitin-dependent protein catabolic process  ER-associated ubiquitin-dependent protein catabolic process  endoplasmic reticulum unfolded protein response  negative regulation of retrograde protein transport, ER to cytosol  
Ontology : EGO-EBIprotein binding  protein N-linked glycosylation via asparagine  integral component of endoplasmic reticulum membrane  ER-associated ubiquitin-dependent protein catabolic process  ER-associated ubiquitin-dependent protein catabolic process  ER-associated ubiquitin-dependent protein catabolic process  endoplasmic reticulum unfolded protein response  negative regulation of retrograde protein transport, ER to cytosol  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkDERL3
Atlas of Cancer Signalling NetworkDERL3
Wikipedia pathwaysDERL3
Orthology - Evolution
OrthoDB91319
GeneTree (enSembl)ENSG00000099958
Phylogenetic Trees/Animal Genes : TreeFamDERL3
HOVERGENQ96Q80
HOGENOMQ96Q80
Homologs : HomoloGeneDERL3
Homology/Alignments : Family Browser (UCSC)DERL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDERL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DERL3
dbVarDERL3
ClinVarDERL3
1000_GenomesDERL3 
Exome Variant ServerDERL3
ExAC (Exome Aggregation Consortium)DERL3 (select the gene name)
Genetic variants : HAPMAP91319
Genomic Variants (DGV)DERL3 [DGVbeta]
DECIPHER (Syndromes)22:24176690-24181199  ENSG00000099958
CONAN: Copy Number AnalysisDERL3 
Mutations
ICGC Data PortalDERL3 
TCGA Data PortalDERL3 
Broad Tumor PortalDERL3
OASIS PortalDERL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDERL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDERL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DERL3
DgiDB (Drug Gene Interaction Database)DERL3
DoCM (Curated mutations)DERL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DERL3 (select a term)
intoGenDERL3
Cancer3DDERL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610305   
Orphanet
MedgenDERL3
Genetic Testing Registry DERL3
NextProtQ96Q80 [Medical]
TSGene91319
GENETestsDERL3
Huge Navigator DERL3 [HugePedia]
snp3D : Map Gene to Disease91319
BioCentury BCIQDERL3
ClinGenDERL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91319
Chemical/Pharm GKB GenePA25883
Clinical trialDERL3
Miscellaneous
canSAR (ICR)DERL3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDERL3
EVEXDERL3
GoPubMedDERL3
iHOPDERL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:01:32 CET 2017

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