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DET1 (de-etiolated homolog 1 (Arabidopsis))

Identity

Other names-
HGNC (Hugo) DET1
LocusID (NCBI) 55070
Location 15q25.3
Location_base_pair Starts at 89055714 and ends at 89089912 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DET1   25477
Entrez_Gene (NCBI)DET1  55070  de-etiolated homolog 1 (Arabidopsis)
Cards
GeneCards (Weizmann)DET1
Ensembl (Hinxton)ENSG00000140543 [Gene_View]  chr15:89055714-89089912 [Contig_View]  DET1 [Vega]
AceView (NCBI)DET1
Genatlas (Paris)DET1
SOURCE (Stanford)NM_001144074 NM_017996
Genomic and cartography
GoldenPath (UCSC)DET1  -  15q25.3   chr15:89055714-89089912 -  15q25.3   [Description]    (hg19-Feb_2009)
EnsemblDET1 - 15q25.3 [CytoView]
Mapping of homologs : NCBIDET1 [Mapview]
OMIM608727   
Gene and transcription
Genbank (Entrez)AB073887 AK000965 AK054603 BC001242 BC064591
RefSeq transcript (SRS)NM_001144074 NM_017996
RefSeq transcript (Entrez)NM_001144074 NM_017996
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NT_010274 NW_001838222 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010274 NW_001838222 NW_004078084
Consensus coding sequences : CCDS (NCBI)DET1
Cluster EST : UnigeneHs.690871 [ SRS ] Hs.690871 [ NCBI ]
CGAP (NCI)Hs.690871
Alternative Splicing : Fast-db (Paris)GSHG0010701
Alternative Splicing GalleryENSG00000140543
Gene ExpressionDET1 [ NCBI-GEO ]   DET1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L5Y6 (SRS) Q7L5Y6 (Uniprot)
NextProtQ7L5Y6
With graphics : InterProQ7L5Y6
Splice isoforms : SwissVarQ7L5Y6(Swissvar)
Domains : Interpro (SRS)De-etiolated_protein_1_Det1   
Domains : Interpro (EBI)De-etiolated_protein_1_Det1   
Related proteins : CluSTrQ7L5Y6
Domain families : Pfam (SRS)Det1 (PF09737)   
Domain families : Pfam (Sanger)Det1 (PF09737)   
Domain families : Pfam (NCBI)pfam09737   
DMDM55070
Blocks (Seattle)Q7L5Y6
Human Protein AtlasENSG00000140543
HPRD13140
IPIIPI00921609   IPI00017502   
Protein Interaction databases
DIP (DOE-UCLA)Q7L5Y6
IntAct (EBI)Q7L5Y6
FunCoupENSG00000140543
REACTOMEDET1
Protein Interaction Database55070
BioGRIDDET1
InParanoidQ7L5Y6
Interologous Interaction database Q7L5Y6
IntegromeDBDET1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DET1
SNP (GeneSNP Utah)DET1
SNP : HGBaseDET1
Genetic variants : HAPMAPDET1
Somatic Mutations in Cancer : COSMICDET1 
CONAN: Copy Number AnalysisDET1 
Mutations and Diseases : HGMDDET1
OMIM608727   
GENETests608727   
Disease Genetic AssociationDET1
Huge Navigator DET1 [HugePedia]  DET1 [HugeCancerGEM]
Genomic VariantsDET1  DET1 [DGVbeta]
ClinVarDET1
snp3D : Map Gene to Disease55070
General knowledge
Homologs : HomoloGeneDET1
Homology/Alignments : Family Browser (UCSC)DET1
Phylogenetic Trees/Animal Genes : TreeFamDET1
Chemical/Protein Interactions : CTD55070
Chemical/Pharm GKB GenePA134943899
Clinical trialDET1
Cancer Resource (Charite)ENSG00000140543
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
PubGeneDET1
iHOPDET1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:42:49 CEST 2013
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