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DET1 (de-etiolated homolog 1 (Arabidopsis))

Identity

Alias_symbol (synonym)FLJ10103
Other alias-
HGNC (Hugo) DET1
LocusID (NCBI) 55070
Atlas_Id 46887
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 88512481 and ends at 88546703 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DET1   25477
Cards
Entrez_Gene (NCBI)DET1  55070  de-etiolated homolog 1 (Arabidopsis)
Aliases
GeneCards (Weizmann)DET1
Ensembl hg19 (Hinxton)ENSG00000140543 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140543 [Gene_View]  chr15:88512481-88546703 [Contig_View]  DET1 [Vega]
ICGC DataPortalENSG00000140543
TCGA cBioPortalDET1
AceView (NCBI)DET1
Genatlas (Paris)DET1
WikiGenes55070
SOURCE (Princeton)DET1
Genetics Home Reference (NIH)DET1
Genomic and cartography
GoldenPath hg38 (UCSC)DET1  -     chr15:88512481-88546703 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DET1  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblDET1 - 15q26.1 [CytoView hg19]  DET1 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIDET1 [Mapview hg19]  DET1 [Mapview hg38]
OMIM608727   
Gene and transcription
Genbank (Entrez)AB073887 AK000965 AK054603 AK090766 AL707845
RefSeq transcript (Entrez)NM_001144074 NM_001321594 NM_001321596 NM_017996
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DET1
Cluster EST : UnigeneHs.690871 [ NCBI ]
CGAP (NCI)Hs.690871
Alternative Splicing GalleryENSG00000140543
Gene ExpressionDET1 [ NCBI-GEO ]   DET1 [ EBI - ARRAY_EXPRESS ]   DET1 [ SEEK ]   DET1 [ MEM ]
Gene Expression Viewer (FireBrowse)DET1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55070
GTEX Portal (Tissue expression)DET1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L5Y6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L5Y6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L5Y6
Splice isoforms : SwissVarQ7L5Y6
PhosPhoSitePlusQ7L5Y6
Domains : Interpro (EBI)De-etiolated_protein_1_Det1   
Domain families : Pfam (Sanger)Det1 (PF09737)   
Domain families : Pfam (NCBI)pfam09737   
Conserved Domain (NCBI)DET1
DMDM Disease mutations55070
Blocks (Seattle)DET1
SuperfamilyQ7L5Y6
Human Protein AtlasENSG00000140543
Peptide AtlasQ7L5Y6
HPRD13140
IPIIPI00921609   IPI00017502   
Protein Interaction databases
DIP (DOE-UCLA)Q7L5Y6
IntAct (EBI)Q7L5Y6
FunCoupENSG00000140543
BioGRIDDET1
STRING (EMBL)DET1
ZODIACDET1
Ontologies - Pathways
QuickGOQ7L5Y6
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
Pathways : KEGGUbiquitin mediated proteolysis   
NDEx NetworkDET1
Atlas of Cancer Signalling NetworkDET1
Wikipedia pathwaysDET1
Orthology - Evolution
OrthoDB55070
GeneTree (enSembl)ENSG00000140543
Phylogenetic Trees/Animal Genes : TreeFamDET1
HOVERGENQ7L5Y6
HOGENOMQ7L5Y6
Homologs : HomoloGeneDET1
Homology/Alignments : Family Browser (UCSC)DET1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDET1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DET1
dbVarDET1
ClinVarDET1
1000_GenomesDET1 
Exome Variant ServerDET1
ExAC (Exome Aggregation Consortium)DET1 (select the gene name)
Genetic variants : HAPMAP55070
Genomic Variants (DGV)DET1 [DGVbeta]
DECIPHERDET1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDET1 
Mutations
ICGC Data PortalDET1 
TCGA Data PortalDET1 
Broad Tumor PortalDET1
OASIS PortalDET1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDET1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDET1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DET1
DgiDB (Drug Gene Interaction Database)DET1
DoCM (Curated mutations)DET1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DET1 (select a term)
intoGenDET1
Cancer3DDET1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608727   
Orphanet
MedgenDET1
Genetic Testing Registry DET1
NextProtQ7L5Y6 [Medical]
TSGene55070
GENETestsDET1
Target ValidationDET1
Huge Navigator DET1 [HugePedia]
snp3D : Map Gene to Disease55070
BioCentury BCIQDET1
ClinGenDET1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55070
Chemical/Pharm GKB GenePA134943899
Clinical trialDET1
Miscellaneous
canSAR (ICR)DET1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDET1
EVEXDET1
GoPubMedDET1
iHOPDET1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:31:01 CEST 2017

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