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DGCR5 (DiGeorge syndrome critical region gene 5 (non-protein coding))

Identity

Other aliasLINC00037
NCRNA00037
HGNC (Hugo) DGCR5
LocusID (NCBI) 26220
Atlas_Id 56855
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18970498 and ends at 18994629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DGCR5 (22q11.21) / DGCR5 (22q11.21)PIP4K2B (17q12) / DGCR5 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DGCR5   16757
Cards
Entrez_Gene (NCBI)DGCR5  26220  DiGeorge syndrome critical region gene 5 (non-protein coding)
AliasesLINC00037; NCRNA00037
GeneCards (Weizmann)DGCR5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:18970498-18994629 [Contig_View]  DGCR5 [Vega]
TCGA cBioPortalDGCR5
AceView (NCBI)DGCR5
Genatlas (Paris)DGCR5
WikiGenes26220
SOURCE (Princeton)DGCR5
Genetics Home Reference (NIH)DGCR5
Genomic and cartography
GoldenPath hg38 (UCSC)DGCR5  -     chr22:18970498-18994629 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DGCR5  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblDGCR5 - 22q11.21 [CytoView hg19]  DGCR5 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIDGCR5 [Mapview hg19]  DGCR5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051434 AI301969 AI566862 BF313645 BG699848
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DGCR5
Cluster EST : UnigeneHs.646438 [ NCBI ]
CGAP (NCI)Hs.646438
Gene ExpressionDGCR5 [ NCBI-GEO ]   DGCR5 [ EBI - ARRAY_EXPRESS ]   DGCR5 [ SEEK ]   DGCR5 [ MEM ]
Gene Expression Viewer (FireBrowse)DGCR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26220
GTEX Portal (Tissue expression)DGCR5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DGCR5
DMDM Disease mutations26220
Blocks (Seattle)DGCR5
Protein Interaction databases
BioGRIDDGCR5
STRING (EMBL)DGCR5
ZODIACDGCR5
Ontologies - Pathways
Huge Navigator DGCR5 [HugePedia]
snp3D : Map Gene to Disease26220
BioCentury BCIQDGCR5
ClinGenDGCR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26220
Chemical/Pharm GKB GenePA38185
Clinical trialDGCR5
Miscellaneous
canSAR (ICR)DGCR5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDGCR5
EVEXDGCR5
GoPubMedDGCR5
iHOPDGCR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:10:27 CET 2017

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