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DGCR5 (DiGeorge syndrome critical region gene 5 (non-protein coding))

Identity

Alias_symbol (synonym)NCRNA00037
LINC00037
Other alias
HGNC (Hugo) DGCR5
LocusID (NCBI) 26220
Atlas_Id 62452
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18958011 and ends at 18982142 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DGCR5 (22q11.21) / DGCR5 (22q11.21)PIP4K2B (17q12) / DGCR5 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DGCR5   16757
Cards
Entrez_Gene (NCBI)DGCR5  26220  DiGeorge syndrome critical region gene 5 (non-protein coding)
AliasesLINC00037; NCRNA00037
GeneCards (Weizmann)DGCR5
Ensembl hg19 (Hinxton)ENSG00000237517 [Gene_View]  chr22:18958011-18982142 [Contig_View]  DGCR5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237517 [Gene_View]  chr22:18958011-18982142 [Contig_View]  DGCR5 [Vega]
ICGC DataPortalENSG00000237517
TCGA cBioPortalDGCR5
AceView (NCBI)DGCR5
Genatlas (Paris)DGCR5
WikiGenes26220
SOURCE (Princeton)DGCR5
Genetics Home Reference (NIH)DGCR5
Genomic and cartography
GoldenPath hg19 (UCSC)DGCR5  -     chr22:18958011-18982142 +  22q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DGCR5  -     22q11.21   [Description]    (hg38-Dec_2013)
EnsemblDGCR5 - 22q11.21 [CytoView hg19]  DGCR5 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIDGCR5 [Mapview hg19]  DGCR5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051434 AI301969 AI566862 BF313645 BG699848
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929429
Consensus coding sequences : CCDS (NCBI)DGCR5
Cluster EST : UnigeneHs.646438 [ NCBI ]
CGAP (NCI)Hs.646438
Alternative Splicing GalleryENSG00000237517
Gene ExpressionDGCR5 [ NCBI-GEO ]   DGCR5 [ EBI - ARRAY_EXPRESS ]   DGCR5 [ SEEK ]   DGCR5 [ MEM ]
Gene Expression Viewer (FireBrowse)DGCR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26220
GTEX Portal (Tissue expression)DGCR5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DGCR5
DMDM Disease mutations26220
Blocks (Seattle)DGCR5
Human Protein AtlasENSG00000237517
Protein Interaction databases
FunCoupENSG00000237517
BioGRIDDGCR5
STRING (EMBL)DGCR5
ZODIACDGCR5
Ontologies - Pathways
Huge Navigator DGCR5 [HugePedia]
snp3D : Map Gene to Disease26220
BioCentury BCIQDGCR5
ClinGenDGCR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26220
Chemical/Pharm GKB GenePA38185
Clinical trialDGCR5
Miscellaneous
canSAR (ICR)DGCR5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDGCR5
EVEXDGCR5
GoPubMedDGCR5
iHOPDGCR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:34 CET 2017

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