Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DGCR6 (DiGeorge syndrome critical region gene 6)

Identity

Other alias-
HGNC (Hugo) DGCR6
LocusID (NCBI) 8214
Atlas_Id 62453
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18906223 and ends at 18912088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DGCR6   2846
Cards
Entrez_Gene (NCBI)DGCR6  8214  DiGeorge syndrome critical region gene 6
Aliases
GeneCards (Weizmann)DGCR6
Ensembl hg19 (Hinxton)ENSG00000183628 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183628 [Gene_View]  chr22:18906223-18912088 [Contig_View]  DGCR6 [Vega]
ICGC DataPortalENSG00000183628
TCGA cBioPortalDGCR6
AceView (NCBI)DGCR6
Genatlas (Paris)DGCR6
WikiGenes8214
SOURCE (Princeton)DGCR6
Genetics Home Reference (NIH)DGCR6
Genomic and cartography
GoldenPath hg38 (UCSC)DGCR6  -     chr22:18906223-18912088 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DGCR6  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblDGCR6 - 22q11.21 [CytoView hg19]  DGCR6 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIDGCR6 [Mapview hg19]  DGCR6 [Mapview hg38]
OMIM192430   601279   
Gene and transcription
Genbank (Entrez)AF228707 AK098780 AK315115 BC033306 BC047039
RefSeq transcript (Entrez)NM_005675
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DGCR6
Cluster EST : UnigeneHs.474185 [ NCBI ]
CGAP (NCI)Hs.474185
Alternative Splicing GalleryENSG00000183628
Gene ExpressionDGCR6 [ NCBI-GEO ]   DGCR6 [ EBI - ARRAY_EXPRESS ]   DGCR6 [ SEEK ]   DGCR6 [ MEM ]
Gene Expression Viewer (FireBrowse)DGCR6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8214
GTEX Portal (Tissue expression)DGCR6
Human Protein AtlasENSG00000183628-DGCR6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14129   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14129  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14129
Splice isoforms : SwissVarQ14129
PhosPhoSitePlusQ14129
Domains : Interpro (EBI)Gonadal   
Domain families : Pfam (Sanger)DGCR6 (PF07324)   
Domain families : Pfam (NCBI)pfam07324   
Conserved Domain (NCBI)DGCR6
DMDM Disease mutations8214
Blocks (Seattle)DGCR6
SuperfamilyQ14129
Human Protein Atlas [tissue]ENSG00000183628-DGCR6 [tissue]
Peptide AtlasQ14129
HPRD03177
IPIIPI00028935   IPI00853534   IPI00853607   IPI00853150   
Protein Interaction databases
DIP (DOE-UCLA)Q14129
IntAct (EBI)Q14129
FunCoupENSG00000183628
BioGRIDDGCR6
STRING (EMBL)DGCR6
ZODIACDGCR6
Ontologies - Pathways
QuickGOQ14129
Ontology : AmiGOmolecular_function  proteinaceous extracellular matrix  nucleus  cell adhesion  animal organ morphogenesis  
Ontology : EGO-EBImolecular_function  proteinaceous extracellular matrix  nucleus  cell adhesion  animal organ morphogenesis  
NDEx NetworkDGCR6
Atlas of Cancer Signalling NetworkDGCR6
Wikipedia pathwaysDGCR6
Orthology - Evolution
OrthoDB8214
GeneTree (enSembl)ENSG00000183628
Phylogenetic Trees/Animal Genes : TreeFamDGCR6
HOVERGENQ14129
HOGENOMQ14129
Homologs : HomoloGeneDGCR6
Homology/Alignments : Family Browser (UCSC)DGCR6
Gene fusions - Rearrangements
Tumor Fusion PortalDGCR6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDGCR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DGCR6
dbVarDGCR6
ClinVarDGCR6
1000_GenomesDGCR6 
Exome Variant ServerDGCR6
ExAC (Exome Aggregation Consortium)ENSG00000183628
GNOMAD BrowserENSG00000183628
Genetic variants : HAPMAP8214
Genomic Variants (DGV)DGCR6 [DGVbeta]
DECIPHERDGCR6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDGCR6 
Mutations
ICGC Data PortalDGCR6 
TCGA Data PortalDGCR6 
Broad Tumor PortalDGCR6
OASIS PortalDGCR6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDGCR6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDGCR6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DGCR6
DgiDB (Drug Gene Interaction Database)DGCR6
DoCM (Curated mutations)DGCR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DGCR6 (select a term)
intoGenDGCR6
Cancer3DDGCR6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM192430    601279   
Orphanet
DisGeNETDGCR6
MedgenDGCR6
Genetic Testing Registry DGCR6
NextProtQ14129 [Medical]
TSGene8214
GENETestsDGCR6
Target ValidationDGCR6
Huge Navigator DGCR6 [HugePedia]
snp3D : Map Gene to Disease8214
BioCentury BCIQDGCR6
ClinGenDGCR6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8214
Chemical/Pharm GKB GenePA27308
Clinical trialDGCR6
Miscellaneous
canSAR (ICR)DGCR6 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDGCR6
EVEXDGCR6
GoPubMedDGCR6
iHOPDGCR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:35 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.