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DGCR6L (DiGeorge syndrome critical region gene 6 like)

Identity

Alias_symbol (synonym)FLJ10666
Other aliasDGCR6
HGNC (Hugo) DGCR6L
LocusID (NCBI) 85359
Atlas_Id 51365
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20314238 and ends at 20320105 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACTG1 (17q25.3) / DGCR6L (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DGCR6L   18551
Cards
Entrez_Gene (NCBI)DGCR6L  85359  DiGeorge syndrome critical region gene 6 like
AliasesDGCR6
GeneCards (Weizmann)DGCR6L
Ensembl hg19 (Hinxton)ENSG00000128185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128185 [Gene_View]  chr22:20314238-20320105 [Contig_View]  DGCR6L [Vega]
ICGC DataPortalENSG00000128185
TCGA cBioPortalDGCR6L
AceView (NCBI)DGCR6L
Genatlas (Paris)DGCR6L
WikiGenes85359
SOURCE (Princeton)DGCR6L
Genetics Home Reference (NIH)DGCR6L
Genomic and cartography
GoldenPath hg38 (UCSC)DGCR6L  -     chr22:20314238-20320105 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DGCR6L  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblDGCR6L - 22q11.21 [CytoView hg19]  DGCR6L - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIDGCR6L [Mapview hg19]  DGCR6L [Mapview hg38]
OMIM609459   
Gene and transcription
Genbank (Entrez)AF228708 AK001528 AK289952 AK307210 AK310899
RefSeq transcript (Entrez)NM_033257
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DGCR6L
Cluster EST : UnigeneHs.410965 [ NCBI ]
CGAP (NCI)Hs.410965
Alternative Splicing GalleryENSG00000128185
Gene ExpressionDGCR6L [ NCBI-GEO ]   DGCR6L [ EBI - ARRAY_EXPRESS ]   DGCR6L [ SEEK ]   DGCR6L [ MEM ]
Gene Expression Viewer (FireBrowse)DGCR6L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85359
GTEX Portal (Tissue expression)DGCR6L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY27
Splice isoforms : SwissVarQ9BY27
PhosPhoSitePlusQ9BY27
Domains : Interpro (EBI)Gonadal   
Domain families : Pfam (Sanger)DGCR6 (PF07324)   
Domain families : Pfam (NCBI)pfam07324   
Conserved Domain (NCBI)DGCR6L
DMDM Disease mutations85359
Blocks (Seattle)DGCR6L
SuperfamilyQ9BY27
Human Protein AtlasENSG00000128185
Peptide AtlasQ9BY27
HPRD16800
IPIIPI00260322   IPI00930183   IPI00877758   IPI00878019   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY27
IntAct (EBI)Q9BY27
FunCoupENSG00000128185
BioGRIDDGCR6L
STRING (EMBL)DGCR6L
ZODIACDGCR6L
Ontologies - Pathways
QuickGOQ9BY27
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkDGCR6L
Atlas of Cancer Signalling NetworkDGCR6L
Wikipedia pathwaysDGCR6L
Orthology - Evolution
OrthoDB85359
GeneTree (enSembl)ENSG00000128185
Phylogenetic Trees/Animal Genes : TreeFamDGCR6L
HOVERGENQ9BY27
HOGENOMQ9BY27
Homologs : HomoloGeneDGCR6L
Homology/Alignments : Family Browser (UCSC)DGCR6L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDGCR6L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DGCR6L
dbVarDGCR6L
ClinVarDGCR6L
1000_GenomesDGCR6L 
Exome Variant ServerDGCR6L
ExAC (Exome Aggregation Consortium)DGCR6L (select the gene name)
Genetic variants : HAPMAP85359
Genomic Variants (DGV)DGCR6L [DGVbeta]
DECIPHERDGCR6L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDGCR6L 
Mutations
ICGC Data PortalDGCR6L 
TCGA Data PortalDGCR6L 
Broad Tumor PortalDGCR6L
OASIS PortalDGCR6L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDGCR6L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDGCR6L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DGCR6L
DgiDB (Drug Gene Interaction Database)DGCR6L
DoCM (Curated mutations)DGCR6L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DGCR6L (select a term)
intoGenDGCR6L
Cancer3DDGCR6L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609459   
Orphanet
MedgenDGCR6L
Genetic Testing Registry DGCR6L
NextProtQ9BY27 [Medical]
TSGene85359
GENETestsDGCR6L
Target ValidationDGCR6L
Huge Navigator DGCR6L [HugePedia]
snp3D : Map Gene to Disease85359
BioCentury BCIQDGCR6L
ClinGenDGCR6L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85359
Chemical/Pharm GKB GenePA38570
Clinical trialDGCR6L
Miscellaneous
canSAR (ICR)DGCR6L (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDGCR6L
EVEXDGCR6L
GoPubMedDGCR6L
iHOPDGCR6L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:31:03 CEST 2017

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