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DHDDS (dehydrodolichyl diphosphate synthase subunit)

Identity

Alias_namesdehydrodolichyl diphosphate synthase
Alias_symbol (synonym)HDS
FLJ13102
DS
RP59
Other aliasCIT
CPT
HGNC (Hugo) DHDDS
LocusID (NCBI) 79947
Atlas_Id 62461
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26432282 and ends at 26471304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DHDDS (1p36.11) / PQBP1 (Xp11.23)DHDDS (1p36.11) / SEC24C (10q22.2)DHDDS (1p36.11) / VPS13D (1p36.22)
LAPTM4A (2p24.1) / DHDDS (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DHDDS   20603
Cards
Entrez_Gene (NCBI)DHDDS  79947  dehydrodolichyl diphosphate synthase subunit
AliasesCIT; CPT; DS; HDS; 
RP59
GeneCards (Weizmann)DHDDS
Ensembl hg19 (Hinxton)ENSG00000117682 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117682 [Gene_View]  chr1:26432282-26471304 [Contig_View]  DHDDS [Vega]
ICGC DataPortalENSG00000117682
TCGA cBioPortalDHDDS
AceView (NCBI)DHDDS
Genatlas (Paris)DHDDS
WikiGenes79947
SOURCE (Princeton)DHDDS
Genetics Home Reference (NIH)DHDDS
Genomic and cartography
GoldenPath hg38 (UCSC)DHDDS  -     chr1:26432282-26471304 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DHDDS  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblDHDDS - 1p36.11 [CytoView hg19]  DHDDS - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIDHDDS [Mapview hg19]  DHDDS [Mapview hg38]
OMIM608172   613861   
Gene and transcription
Genbank (Entrez)AB090852 AK023164 AK297134 AK308187 AK316485
RefSeq transcript (Entrez)NM_001243564 NM_001243565 NM_001319959 NM_024887 NM_205861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DHDDS
Cluster EST : UnigeneHs.369385 [ NCBI ]
CGAP (NCI)Hs.369385
Alternative Splicing GalleryENSG00000117682
Gene ExpressionDHDDS [ NCBI-GEO ]   DHDDS [ EBI - ARRAY_EXPRESS ]   DHDDS [ SEEK ]   DHDDS [ MEM ]
Gene Expression Viewer (FireBrowse)DHDDS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79947
GTEX Portal (Tissue expression)DHDDS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SQ9
Splice isoforms : SwissVarQ86SQ9
PhosPhoSitePlusQ86SQ9
Domaine pattern : Prosite (Expaxy)UPP_SYNTHASE (PS01066)   
Domains : Interpro (EBI)UPP_synth-like    UPP_synth-like_CS   
Domain families : Pfam (Sanger)Prenyltransf (PF01255)   
Domain families : Pfam (NCBI)pfam01255   
Conserved Domain (NCBI)DHDDS
DMDM Disease mutations79947
Blocks (Seattle)DHDDS
SuperfamilyQ86SQ9
Human Protein AtlasENSG00000117682
Peptide AtlasQ86SQ9
HPRD12183
IPIIPI00410097   IPI00514787   IPI00410099   IPI00514729   IPI00515105   IPI00514634   IPI00514794   IPI00513958   IPI00647181   IPI01011907   IPI00922374   IPI00977374   IPI00979475   IPI00980956   IPI00983014   IPI00978850   IPI00979470   
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ9
IntAct (EBI)Q86SQ9
FunCoupENSG00000117682
BioGRIDDHDDS
STRING (EMBL)DHDDS
ZODIACDHDDS
Ontologies - Pathways
QuickGOQ86SQ9
Ontology : AmiGOpolyprenyltransferase activity  protein binding  endoplasmic reticulum membrane  protein glycosylation  dolichyl diphosphate biosynthetic process  polyprenol biosynthetic process  
Ontology : EGO-EBIpolyprenyltransferase activity  protein binding  endoplasmic reticulum membrane  protein glycosylation  dolichyl diphosphate biosynthetic process  polyprenol biosynthetic process  
Pathways : KEGGTerpenoid backbone biosynthesis   
NDEx NetworkDHDDS
Atlas of Cancer Signalling NetworkDHDDS
Wikipedia pathwaysDHDDS
Orthology - Evolution
OrthoDB79947
GeneTree (enSembl)ENSG00000117682
Phylogenetic Trees/Animal Genes : TreeFamDHDDS
HOVERGENQ86SQ9
HOGENOMQ86SQ9
Homologs : HomoloGeneDHDDS
Homology/Alignments : Family Browser (UCSC)DHDDS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDHDDS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DHDDS
dbVarDHDDS
ClinVarDHDDS
1000_GenomesDHDDS 
Exome Variant ServerDHDDS
ExAC (Exome Aggregation Consortium)DHDDS (select the gene name)
Genetic variants : HAPMAP79947
Genomic Variants (DGV)DHDDS [DGVbeta]
DECIPHERDHDDS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDHDDS 
Mutations
ICGC Data PortalDHDDS 
TCGA Data PortalDHDDS 
Broad Tumor PortalDHDDS
OASIS PortalDHDDS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDHDDS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDHDDS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch DHDDS
DgiDB (Drug Gene Interaction Database)DHDDS
DoCM (Curated mutations)DHDDS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DHDDS (select a term)
intoGenDHDDS
Cancer3DDHDDS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608172    613861   
Orphanet659   
MedgenDHDDS
Genetic Testing Registry DHDDS
NextProtQ86SQ9 [Medical]
TSGene79947
GENETestsDHDDS
Target ValidationDHDDS
Huge Navigator DHDDS [HugePedia]
snp3D : Map Gene to Disease79947
BioCentury BCIQDHDDS
ClinGenDHDDS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79947
Chemical/Pharm GKB GenePA134867119
Clinical trialDHDDS
Miscellaneous
canSAR (ICR)DHDDS (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDHDDS
EVEXDHDDS
GoPubMedDHDDS
iHOPDHDDS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:49 CEST 2017

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