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DHX29 (DExH-box helicase 29)

Identity

Alias_namesDDX29
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 29
DEAH-box helicase 29
Other alias
HGNC (Hugo) DHX29
LocusID (NCBI) 54505
Atlas_Id 46773
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 55256055 and ends at 55307722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDC20B (5q11.2) / DHX29 (5q11.2)DHX29 (5q11.2) / SVIL (10p11.23)CDC20B 5q11.2 / DHX29 5q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DHX29   15815
Cards
Entrez_Gene (NCBI)DHX29  54505  DExH-box helicase 29
AliasesDDX29
GeneCards (Weizmann)DHX29
Ensembl hg19 (Hinxton)ENSG00000067248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000067248 [Gene_View]  chr5:55256055-55307722 [Contig_View]  DHX29 [Vega]
ICGC DataPortalENSG00000067248
TCGA cBioPortalDHX29
AceView (NCBI)DHX29
Genatlas (Paris)DHX29
WikiGenes54505
SOURCE (Princeton)DHX29
Genetics Home Reference (NIH)DHX29
Genomic and cartography
GoldenPath hg38 (UCSC)DHX29  -     chr5:55256055-55307722 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DHX29  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblDHX29 - 5q11.2 [CytoView hg19]  DHX29 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIDHX29 [Mapview hg19]  DHX29 [Mapview hg38]
OMIM612720   
Gene and transcription
Genbank (Entrez)AF070639 AK025145 AK308332 AL079292 AL834496
RefSeq transcript (Entrez)NM_001345964 NM_001345965 NM_019030
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DHX29
Cluster EST : UnigeneHs.593268 [ NCBI ]
CGAP (NCI)Hs.593268
Alternative Splicing GalleryENSG00000067248
Gene ExpressionDHX29 [ NCBI-GEO ]   DHX29 [ EBI - ARRAY_EXPRESS ]   DHX29 [ SEEK ]   DHX29 [ MEM ]
Gene Expression Viewer (FireBrowse)DHX29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54505
GTEX Portal (Tissue expression)DHX29
Human Protein AtlasENSG00000067248-DHX29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z478   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z478  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z478
Splice isoforms : SwissVarQ7Z478
PhosPhoSitePlusQ7Z478
Domaine pattern : Prosite (Expaxy)DEAH_ATP_HELICASE (PS00690)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    DNA/RNA_helicase_DEAH_CS    DUF1605    Helicase-assoc_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase   
Domain families : Pfam (Sanger)DEAD (PF00270)    HA2 (PF04408)    Helicase_C (PF00271)    OB_NTP_bind (PF07717)   
Domain families : Pfam (NCBI)pfam00270    pfam04408    pfam00271    pfam07717   
Domain families : Smart (EMBL)DEXDc (SM00487)  HA2 (SM00847)  HELICc (SM00490)  
Conserved Domain (NCBI)DHX29
DMDM Disease mutations54505
Blocks (Seattle)DHX29
SuperfamilyQ7Z478
Human Protein Atlas [tissue]ENSG00000067248-DHX29 [tissue]
Peptide AtlasQ7Z478
HPRD10882
IPIIPI00217413   IPI00966276   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z478
IntAct (EBI)Q7Z478
FunCoupENSG00000067248
BioGRIDDHX29
STRING (EMBL)DHX29
ZODIACDHX29
Ontologies - Pathways
QuickGOQ7Z478
Ontology : AmiGORNA binding  translation initiation factor activity  ATP-dependent RNA helicase activity  ATP binding  mitochondrion  RNA processing  translational initiation  eukaryotic 43S preinitiation complex  ribosomal small subunit binding  cadherin binding  
Ontology : EGO-EBIRNA binding  translation initiation factor activity  ATP-dependent RNA helicase activity  ATP binding  mitochondrion  RNA processing  translational initiation  eukaryotic 43S preinitiation complex  ribosomal small subunit binding  cadherin binding  
NDEx NetworkDHX29
Atlas of Cancer Signalling NetworkDHX29
Wikipedia pathwaysDHX29
Orthology - Evolution
OrthoDB54505
GeneTree (enSembl)ENSG00000067248
Phylogenetic Trees/Animal Genes : TreeFamDHX29
HOVERGENQ7Z478
HOGENOMQ7Z478
Homologs : HomoloGeneDHX29
Homology/Alignments : Family Browser (UCSC)DHX29
Gene fusions - Rearrangements
Fusion : MitelmanCDC20B/DHX29 [5q11.2/5q11.2]  [t(5;5)(q11;q11)]  
Fusion: TCGA_MDACCCDC20B 5q11.2 DHX29 5q11.2 OV
Tumor Fusion PortalDHX29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDHX29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DHX29
dbVarDHX29
ClinVarDHX29
1000_GenomesDHX29 
Exome Variant ServerDHX29
ExAC (Exome Aggregation Consortium)ENSG00000067248
GNOMAD BrowserENSG00000067248
Genetic variants : HAPMAP54505
Genomic Variants (DGV)DHX29 [DGVbeta]
DECIPHERDHX29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDHX29 
Mutations
ICGC Data PortalDHX29 
TCGA Data PortalDHX29 
Broad Tumor PortalDHX29
OASIS PortalDHX29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDHX29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDHX29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch DHX29
DgiDB (Drug Gene Interaction Database)DHX29
DoCM (Curated mutations)DHX29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DHX29 (select a term)
intoGenDHX29
Cancer3DDHX29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612720   
Orphanet
DisGeNETDHX29
MedgenDHX29
Genetic Testing Registry DHX29
NextProtQ7Z478 [Medical]
TSGene54505
GENETestsDHX29
Target ValidationDHX29
Huge Navigator DHX29 [HugePedia]
snp3D : Map Gene to Disease54505
BioCentury BCIQDHX29
ClinGenDHX29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54505
Chemical/Pharm GKB GenePA27215
Clinical trialDHX29
Miscellaneous
canSAR (ICR)DHX29 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDHX29
EVEXDHX29
GoPubMedDHX29
iHOPDHX29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:10:31 CET 2017

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