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DIEXF (digestive organ expansion factor homolog (zebrafish))

Identity

Alias_namesC1orf107
chromosome 1 open reading frame 107
Alias_symbol (synonym)MGC29875
DEF
UTP25
Other aliasDJ434O14.5
HGNC (Hugo) DIEXF
LocusID (NCBI) 27042
Atlas_Id 62482
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 210001312 and ends at 210030910 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DIEXF   28440
Cards
Entrez_Gene (NCBI)DIEXF  27042  digestive organ expansion factor homolog (zebrafish)
AliasesC1orf107; DEF; DJ434O14.5; UTP25
GeneCards (Weizmann)DIEXF
Ensembl hg19 (Hinxton)ENSG00000117597 [Gene_View]  chr1:210001312-210030910 [Contig_View]  DIEXF [Vega]
Ensembl hg38 (Hinxton)ENSG00000117597 [Gene_View]  chr1:210001312-210030910 [Contig_View]  DIEXF [Vega]
ICGC DataPortalENSG00000117597
TCGA cBioPortalDIEXF
AceView (NCBI)DIEXF
Genatlas (Paris)DIEXF
WikiGenes27042
SOURCE (Princeton)DIEXF
Genetics Home Reference (NIH)DIEXF
Genomic and cartography
GoldenPath hg19 (UCSC)DIEXF  -     chr1:210001312-210030910 +  1q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DIEXF  -     1q32.2   [Description]    (hg38-Dec_2013)
EnsemblDIEXF - 1q32.2 [CytoView hg19]  DIEXF - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBIDIEXF [Mapview hg19]  DIEXF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022766 AK096118 AK123674 AK289613 AK295799
RefSeq transcript (Entrez)NM_014388
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)DIEXF
Cluster EST : UnigeneHs.194754 [ NCBI ]
CGAP (NCI)Hs.194754
Alternative Splicing GalleryENSG00000117597
Gene ExpressionDIEXF [ NCBI-GEO ]   DIEXF [ EBI - ARRAY_EXPRESS ]   DIEXF [ SEEK ]   DIEXF [ MEM ]
Gene Expression Viewer (FireBrowse)DIEXF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27042
GTEX Portal (Tissue expression)DIEXF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CQ4
Splice isoforms : SwissVarQ68CQ4
PhosPhoSitePlusQ68CQ4
Domains : Interpro (EBI)Digest_organ_expansion_fac-prd    P-loop_NTPase   
Domain families : Pfam (Sanger)DUF1253 (PF06862)   
Domain families : Pfam (NCBI)pfam06862   
Conserved Domain (NCBI)DIEXF
DMDM Disease mutations27042
Blocks (Seattle)DIEXF
SuperfamilyQ68CQ4
Human Protein AtlasENSG00000117597
Peptide AtlasQ68CQ4
HPRD14535
IPIIPI00004290   IPI00017386   IPI00607869   
Protein Interaction databases
DIP (DOE-UCLA)Q68CQ4
IntAct (EBI)Q68CQ4
FunCoupENSG00000117597
BioGRIDDIEXF
STRING (EMBL)DIEXF
ZODIACDIEXF
Ontologies - Pathways
QuickGOQ68CQ4
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleolus  multicellular organismal development  rRNA binding  small-subunit processome  U3 snoRNA binding  poly(A) RNA binding  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleolus  multicellular organismal development  rRNA binding  small-subunit processome  U3 snoRNA binding  poly(A) RNA binding  
NDEx NetworkDIEXF
Atlas of Cancer Signalling NetworkDIEXF
Wikipedia pathwaysDIEXF
Orthology - Evolution
OrthoDB27042
GeneTree (enSembl)ENSG00000117597
Phylogenetic Trees/Animal Genes : TreeFamDIEXF
HOVERGENQ68CQ4
HOGENOMQ68CQ4
Homologs : HomoloGeneDIEXF
Homology/Alignments : Family Browser (UCSC)DIEXF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDIEXF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DIEXF
dbVarDIEXF
ClinVarDIEXF
1000_GenomesDIEXF 
Exome Variant ServerDIEXF
ExAC (Exome Aggregation Consortium)DIEXF (select the gene name)
Genetic variants : HAPMAP27042
Genomic Variants (DGV)DIEXF [DGVbeta]
DECIPHER (Syndromes)1:210001312-210030910  ENSG00000117597
CONAN: Copy Number AnalysisDIEXF 
Mutations
ICGC Data PortalDIEXF 
TCGA Data PortalDIEXF 
Broad Tumor PortalDIEXF
OASIS PortalDIEXF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDIEXF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDIEXF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DIEXF
DgiDB (Drug Gene Interaction Database)DIEXF
DoCM (Curated mutations)DIEXF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DIEXF (select a term)
intoGenDIEXF
Cancer3DDIEXF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDIEXF
Genetic Testing Registry DIEXF
NextProtQ68CQ4 [Medical]
TSGene27042
GENETestsDIEXF
Huge Navigator DIEXF [HugePedia]
snp3D : Map Gene to Disease27042
BioCentury BCIQDIEXF
ClinGenDIEXF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27042
Chemical/Pharm GKB GenePA142672491
Clinical trialDIEXF
Miscellaneous
canSAR (ICR)DIEXF (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDIEXF
EVEXDIEXF
GoPubMedDIEXF
iHOPDIEXF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:41 CET 2017

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