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DIEXF (digestive organ expansion factor homolog (zebrafish))

Identity

Other aliasC1orf107
DEF
DJ434O14.5
UTP25
HGNC (Hugo) DIEXF
LocusID (NCBI) 27042
Atlas_Id 57113
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 209855053 and ends at 209857563 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DIEXF   28440
Cards
Entrez_Gene (NCBI)DIEXF  27042  digestive organ expansion factor homolog (zebrafish)
AliasesC1orf107; DEF; DJ434O14.5; UTP25
GeneCards (Weizmann)DIEXF
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:209855053-209857563 [Contig_View]  DIEXF [Vega]
TCGA cBioPortalDIEXF
AceView (NCBI)DIEXF
Genatlas (Paris)DIEXF
WikiGenes27042
SOURCE (Princeton)DIEXF
Genetics Home Reference (NIH)DIEXF
Genomic and cartography
GoldenPath hg38 (UCSC)DIEXF  -     chr1:209855053-209857563 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DIEXF  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblDIEXF - 1q32.2 [CytoView hg19]  DIEXF - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBIDIEXF [Mapview hg19]  DIEXF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022766 AK096118 AK123674 AK289613 AK295799
RefSeq transcript (Entrez)NM_014388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DIEXF
Cluster EST : UnigeneHs.194754 [ NCBI ]
CGAP (NCI)Hs.194754
Gene ExpressionDIEXF [ NCBI-GEO ]   DIEXF [ EBI - ARRAY_EXPRESS ]   DIEXF [ SEEK ]   DIEXF [ MEM ]
Gene Expression Viewer (FireBrowse)DIEXF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27042
GTEX Portal (Tissue expression)DIEXF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CQ4
Splice isoforms : SwissVarQ68CQ4
PhosPhoSitePlusQ68CQ4
Domains : Interpro (EBI)Digest_organ_expansion_fac-prd    P-loop_NTPase   
Domain families : Pfam (Sanger)UTP25 (PF06862)   
Domain families : Pfam (NCBI)pfam06862   
Conserved Domain (NCBI)DIEXF
DMDM Disease mutations27042
Blocks (Seattle)DIEXF
SuperfamilyQ68CQ4
Peptide AtlasQ68CQ4
IPIIPI00004290   IPI00017386   IPI00607869   
Protein Interaction databases
DIP (DOE-UCLA)Q68CQ4
IntAct (EBI)Q68CQ4
BioGRIDDIEXF
STRING (EMBL)DIEXF
ZODIACDIEXF
Ontologies - Pathways
QuickGOQ68CQ4
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  rRNA processing  multicellular organism development  rRNA binding  small-subunit processome  U3 snoRNA binding  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  rRNA processing  multicellular organism development  rRNA binding  small-subunit processome  U3 snoRNA binding  
NDEx NetworkDIEXF
Atlas of Cancer Signalling NetworkDIEXF
Wikipedia pathwaysDIEXF
Orthology - Evolution
OrthoDB27042
Phylogenetic Trees/Animal Genes : TreeFamDIEXF
HOVERGENQ68CQ4
HOGENOMQ68CQ4
Homologs : HomoloGeneDIEXF
Homology/Alignments : Family Browser (UCSC)DIEXF
Gene fusions - Rearrangements
Tumor Fusion PortalDIEXF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDIEXF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DIEXF
dbVarDIEXF
ClinVarDIEXF
1000_GenomesDIEXF 
Exome Variant ServerDIEXF
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP27042
Genomic Variants (DGV)DIEXF [DGVbeta]
DECIPHERDIEXF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDIEXF 
Mutations
ICGC Data PortalDIEXF 
TCGA Data PortalDIEXF 
Broad Tumor PortalDIEXF
OASIS PortalDIEXF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDIEXF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDIEXF
BioMutasearch DIEXF
DgiDB (Drug Gene Interaction Database)DIEXF
DoCM (Curated mutations)DIEXF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DIEXF (select a term)
intoGenDIEXF
Cancer3DDIEXF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDIEXF
MedgenDIEXF
Genetic Testing Registry DIEXF
NextProtQ68CQ4 [Medical]
TSGene27042
GENETestsDIEXF
Target ValidationDIEXF
Huge Navigator DIEXF [HugePedia]
snp3D : Map Gene to Disease27042
BioCentury BCIQDIEXF
ClinGenDIEXF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27042
Chemical/Pharm GKB GenePA142672491
Clinical trialDIEXF
Miscellaneous
canSAR (ICR)DIEXF (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDIEXF
EVEXDIEXF
GoPubMedDIEXF
iHOPDIEXF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:10:35 CET 2017

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