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DIMT1 (DIM1 dimethyladenosine transferase 1 homolog)

Identity

Alias_namesDIMT1L
DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)
Alias_symbol (synonym)HSA9761
Other aliasDIM1
HUSSY5
HGNC (Hugo) DIMT1
LocusID (NCBI) 27292
Atlas_Id 56066
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 62391717 and ends at 62403960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DIMT1 (5q12.1) / RNF144B (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DIMT1   30217
Cards
Entrez_Gene (NCBI)DIMT1  27292  DIM1 dimethyladenosine transferase 1 homolog
AliasesDIM1; DIMT1L; HSA9761; HUSSY5
GeneCards (Weizmann)DIMT1
Ensembl hg19 (Hinxton)ENSG00000086189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086189 [Gene_View]  chr5:62391717-62403960 [Contig_View]  DIMT1 [Vega]
ICGC DataPortalENSG00000086189
TCGA cBioPortalDIMT1
AceView (NCBI)DIMT1
Genatlas (Paris)DIMT1
WikiGenes27292
SOURCE (Princeton)DIMT1
Genetics Home Reference (NIH)DIMT1
Genomic and cartography
GoldenPath hg38 (UCSC)DIMT1  -     chr5:62391717-62403960 -  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DIMT1  -     5q12.1   [Description]    (hg19-Feb_2009)
EnsemblDIMT1 - 5q12.1 [CytoView hg19]  DIMT1 - 5q12.1 [CytoView hg38]
Mapping of homologs : NCBIDIMT1 [Mapview hg19]  DIMT1 [Mapview hg38]
OMIM612499   
Gene and transcription
Genbank (Entrez)AF091078 AF102147 AJ009761 AK292723 AK299480
RefSeq transcript (Entrez)NM_001348076 NM_001348077 NM_014473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DIMT1
Cluster EST : UnigeneHs.731665 [ NCBI ]
CGAP (NCI)Hs.731665
Alternative Splicing GalleryENSG00000086189
Gene ExpressionDIMT1 [ NCBI-GEO ]   DIMT1 [ EBI - ARRAY_EXPRESS ]   DIMT1 [ SEEK ]   DIMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)DIMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27292
GTEX Portal (Tissue expression)DIMT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNQ2
Splice isoforms : SwissVarQ9UNQ2
Catalytic activity : Enzyme2.1.1.183 [ Enzyme-Expasy ]   2.1.1.1832.1.1.183 [ IntEnz-EBI ]   2.1.1.183 [ BRENDA ]   2.1.1.183 [ KEGG ]   
PhosPhoSitePlusQ9UNQ2
Domaine pattern : Prosite (Expaxy)RRNA_A_DIMETH (PS01131)    SAM_RNA_A_N6_MT (PS51689)   
Domains : Interpro (EBI)KsgA/Erm    rRNA_Ade_Mease_Trfase_CS    rRNA_Ade_methylase_Trfase_N    rRNA_adenine_dimethylase    SAM-dependent_MTases   
Domain families : Pfam (Sanger)RrnaAD (PF00398)   
Domain families : Pfam (NCBI)pfam00398   
Domain families : Smart (EMBL)rADc (SM00650)  
Conserved Domain (NCBI)DIMT1
DMDM Disease mutations27292
Blocks (Seattle)DIMT1
PDB (SRS)1ZQ9   
PDB (PDBSum)1ZQ9   
PDB (IMB)1ZQ9   
PDB (RSDB)1ZQ9   
Structural Biology KnowledgeBase1ZQ9   
SCOP (Structural Classification of Proteins)1ZQ9   
CATH (Classification of proteins structures)1ZQ9   
SuperfamilyQ9UNQ2
Human Protein AtlasENSG00000086189
Peptide AtlasQ9UNQ2
HPRD13676
IPIIPI00004459   IPI00967490   IPI00967757   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNQ2
IntAct (EBI)Q9UNQ2
FunCoupENSG00000086189
BioGRIDDIMT1
STRING (EMBL)DIMT1
ZODIACDIMT1
Ontologies - Pathways
QuickGOQ9UNQ2
Ontology : AmiGOrRNA (adenine-N6,N6-)-dimethyltransferase activity  rRNA (adenine-N6,N6-)-dimethyltransferase activity  RNA binding  nucleus  nucleoplasm  nucleolus  mitochondrial matrix  cytosol  rRNA methylation  18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity  
Ontology : EGO-EBIrRNA (adenine-N6,N6-)-dimethyltransferase activity  rRNA (adenine-N6,N6-)-dimethyltransferase activity  RNA binding  nucleus  nucleoplasm  nucleolus  mitochondrial matrix  cytosol  rRNA methylation  18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity  
NDEx NetworkDIMT1
Atlas of Cancer Signalling NetworkDIMT1
Wikipedia pathwaysDIMT1
Orthology - Evolution
OrthoDB27292
GeneTree (enSembl)ENSG00000086189
Phylogenetic Trees/Animal Genes : TreeFamDIMT1
HOVERGENQ9UNQ2
HOGENOMQ9UNQ2
Homologs : HomoloGeneDIMT1
Homology/Alignments : Family Browser (UCSC)DIMT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDIMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DIMT1
dbVarDIMT1
ClinVarDIMT1
1000_GenomesDIMT1 
Exome Variant ServerDIMT1
ExAC (Exome Aggregation Consortium)DIMT1 (select the gene name)
Genetic variants : HAPMAP27292
Genomic Variants (DGV)DIMT1 [DGVbeta]
DECIPHERDIMT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDIMT1 
Mutations
ICGC Data PortalDIMT1 
TCGA Data PortalDIMT1 
Broad Tumor PortalDIMT1
OASIS PortalDIMT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDIMT1
BioMutasearch DIMT1
DgiDB (Drug Gene Interaction Database)DIMT1
DoCM (Curated mutations)DIMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DIMT1 (select a term)
intoGenDIMT1
Cancer3DDIMT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612499   
Orphanet
MedgenDIMT1
Genetic Testing Registry DIMT1
NextProtQ9UNQ2 [Medical]
TSGene27292
GENETestsDIMT1
Target ValidationDIMT1
Huge Navigator DIMT1 [HugePedia]
snp3D : Map Gene to Disease27292
BioCentury BCIQDIMT1
ClinGenDIMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27292
Chemical/Pharm GKB GenePA162383599
Clinical trialDIMT1
Miscellaneous
canSAR (ICR)DIMT1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDIMT1
EVEXDIMT1
GoPubMedDIMT1
iHOPDIMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:05:24 CEST 2017

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