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DLGAP3 (discs large homolog associated protein 3)

Identity

Alias_namesdiscs, large (Drosophila) homolog-associated protein 3
discs large homolog associated protein 3
Alias_symbol (synonym)SAPAP3
DAP3
Other alias
HGNC (Hugo) DLGAP3
LocusID (NCBI) 58512
Atlas_Id 52994
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 35331037 and ends at 35395186 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DLGAP3 (1p34.3) / PTK2 (8q24.3)DLGAP3 (1p34.3) / PTK2B (8p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DLGAP3   30368
Cards
Entrez_Gene (NCBI)DLGAP3  58512  discs large homolog associated protein 3
AliasesDAP3; SAPAP3
GeneCards (Weizmann)DLGAP3
Ensembl hg19 (Hinxton)ENSG00000116544 [Gene_View]  chr1:35331037-35395186 [Contig_View]  DLGAP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116544 [Gene_View]  chr1:35331037-35395186 [Contig_View]  DLGAP3 [Vega]
ICGC DataPortalENSG00000116544
TCGA cBioPortalDLGAP3
AceView (NCBI)DLGAP3
Genatlas (Paris)DLGAP3
WikiGenes58512
SOURCE (Princeton)DLGAP3
Genetics Home Reference (NIH)DLGAP3
Genomic and cartography
GoldenPath hg19 (UCSC)DLGAP3  -     chr1:35331037-35395186 -  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DLGAP3  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblDLGAP3 - 1p34.3 [CytoView hg19]  DLGAP3 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIDLGAP3 [Mapview hg19]  DLGAP3 [Mapview hg38]
OMIM611413   
Gene and transcription
Genbank (Entrez)AF131778 AK294907 BC114369 BC114370
RefSeq transcript (Entrez)NM_001080418
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)DLGAP3
Cluster EST : UnigeneHs.733945 [ NCBI ]
CGAP (NCI)Hs.733945
Alternative Splicing GalleryENSG00000116544
Gene ExpressionDLGAP3 [ NCBI-GEO ]   DLGAP3 [ EBI - ARRAY_EXPRESS ]   DLGAP3 [ SEEK ]   DLGAP3 [ MEM ]
Gene Expression Viewer (FireBrowse)DLGAP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58512
GTEX Portal (Tissue expression)DLGAP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95886   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95886  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95886
Splice isoforms : SwissVarO95886
PhosPhoSitePlusO95886
Domains : Interpro (EBI)DLGAP3    SAPAP   
Domain families : Pfam (Sanger)GKAP (PF03359)   
Domain families : Pfam (NCBI)pfam03359   
Conserved Domain (NCBI)DLGAP3
DMDM Disease mutations58512
Blocks (Seattle)DLGAP3
SuperfamilyO95886
Human Protein AtlasENSG00000116544
Peptide AtlasO95886
IPIIPI00219434   IPI01010375   
Protein Interaction databases
DIP (DOE-UCLA)O95886
IntAct (EBI)O95886
FunCoupENSG00000116544
BioGRIDDLGAP3
STRING (EMBL)DLGAP3
ZODIACDLGAP3
Ontologies - Pathways
QuickGOO95886
Ontology : AmiGObeta-amyloid binding  protein binding  postsynaptic density  protein domain specific binding  signaling  cell junction  neuronal cell body  dendritic spine  postsynaptic membrane  
Ontology : EGO-EBIbeta-amyloid binding  protein binding  postsynaptic density  protein domain specific binding  signaling  cell junction  neuronal cell body  dendritic spine  postsynaptic membrane  
NDEx NetworkDLGAP3
Atlas of Cancer Signalling NetworkDLGAP3
Wikipedia pathwaysDLGAP3
Orthology - Evolution
OrthoDB58512
GeneTree (enSembl)ENSG00000116544
Phylogenetic Trees/Animal Genes : TreeFamDLGAP3
HOVERGENO95886
HOGENOMO95886
Homologs : HomoloGeneDLGAP3
Homology/Alignments : Family Browser (UCSC)DLGAP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDLGAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DLGAP3
dbVarDLGAP3
ClinVarDLGAP3
1000_GenomesDLGAP3 
Exome Variant ServerDLGAP3
ExAC (Exome Aggregation Consortium)DLGAP3 (select the gene name)
Genetic variants : HAPMAP58512
Genomic Variants (DGV)DLGAP3 [DGVbeta]
DECIPHER (Syndromes)1:35331037-35395186  ENSG00000116544
CONAN: Copy Number AnalysisDLGAP3 
Mutations
ICGC Data PortalDLGAP3 
TCGA Data PortalDLGAP3 
Broad Tumor PortalDLGAP3
OASIS PortalDLGAP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDLGAP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDLGAP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DLGAP3
DgiDB (Drug Gene Interaction Database)DLGAP3
DoCM (Curated mutations)DLGAP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DLGAP3 (select a term)
intoGenDLGAP3
Cancer3DDLGAP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611413   
Orphanet
MedgenDLGAP3
Genetic Testing Registry DLGAP3
NextProtO95886 [Medical]
TSGene58512
GENETestsDLGAP3
Huge Navigator DLGAP3 [HugePedia]
snp3D : Map Gene to Disease58512
BioCentury BCIQDLGAP3
ClinGenDLGAP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58512
Chemical/Pharm GKB GenePA134923893
Clinical trialDLGAP3
Miscellaneous
canSAR (ICR)DLGAP3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDLGAP3
EVEXDLGAP3
GoPubMedDLGAP3
iHOPDLGAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:03:23 CET 2017

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