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DMAP1 (DNA methyltransferase 1 associated protein 1)

Identity

Alias_symbol (synonym)DNMAP1
FLJ11543
KIAA1425
DNMTAP1
EAF2
MEAF2
SWC4
Other alias
HGNC (Hugo) DMAP1
LocusID (NCBI) 55929
Atlas_Id 43045
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44213453 and ends at 44220679 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMAP1   18291
Cards
Entrez_Gene (NCBI)DMAP1  55929  DNA methyltransferase 1 associated protein 1
AliasesDNMAP1; DNMTAP1; EAF2; MEAF2; 
SWC4
GeneCards (Weizmann)DMAP1
Ensembl hg19 (Hinxton)ENSG00000178028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178028 [Gene_View]  chr1:44213453-44220679 [Contig_View]  DMAP1 [Vega]
ICGC DataPortalENSG00000178028
TCGA cBioPortalDMAP1
AceView (NCBI)DMAP1
Genatlas (Paris)DMAP1
WikiGenes55929
SOURCE (Princeton)DMAP1
Genetics Home Reference (NIH)DMAP1
Genomic and cartography
GoldenPath hg38 (UCSC)DMAP1  -     chr1:44213453-44220679 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMAP1  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblDMAP1 - 1p34.1 [CytoView hg19]  DMAP1 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIDMAP1 [Mapview hg19]  DMAP1 [Mapview hg38]
OMIM605077   
Gene and transcription
Genbank (Entrez)AB037846 AF265228 AK021605 AK054954 AK092898
RefSeq transcript (Entrez)NM_001034023 NM_001034024 NM_019100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMAP1
Cluster EST : UnigeneHs.8008 [ NCBI ]
CGAP (NCI)Hs.8008
Alternative Splicing GalleryENSG00000178028
Gene ExpressionDMAP1 [ NCBI-GEO ]   DMAP1 [ EBI - ARRAY_EXPRESS ]   DMAP1 [ SEEK ]   DMAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)DMAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55929
GTEX Portal (Tissue expression)DMAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPF5
Splice isoforms : SwissVarQ9NPF5
PhosPhoSitePlusQ9NPF5
Domains : Interpro (EBI)DAMP1_SANT-like    DMAP1    Swc4/Dmap1   
Domain families : Pfam (Sanger)DMAP1 (PF05499)    SANT_DAMP1_like (PF16282)   
Domain families : Pfam (NCBI)pfam05499    pfam16282   
Domain structure : Prodom (Prabi Lyon)DMAP1 (PD492828)   
Conserved Domain (NCBI)DMAP1
DMDM Disease mutations55929
Blocks (Seattle)DMAP1
PDB (SRS)3HM5    4IEJ   
PDB (PDBSum)3HM5    4IEJ   
PDB (IMB)3HM5    4IEJ   
PDB (RSDB)3HM5    4IEJ   
Structural Biology KnowledgeBase3HM5    4IEJ   
SCOP (Structural Classification of Proteins)3HM5    4IEJ   
CATH (Classification of proteins structures)3HM5    4IEJ   
SuperfamilyQ9NPF5
Human Protein AtlasENSG00000178028
Peptide AtlasQ9NPF5
HPRD05465
IPIIPI00219919   IPI00644814   IPI00643843   IPI00644235   IPI00514540   IPI00641689   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPF5
IntAct (EBI)Q9NPF5
FunCoupENSG00000178028
BioGRIDDMAP1
STRING (EMBL)DMAP1
ZODIACDMAP1
Ontologies - Pathways
QuickGOQ9NPF5
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II repressing transcription factor binding  transcription corepressor activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  replication fork  cytoplasm  cytosol  DNA repair  DNA methylation  chromatin remodeling  transcription, DNA-templated  NuA4 histone acetyltransferase complex  regulation of growth  positive regulation of transcription factor import into nucleus  histone H4 acetylation  histone H2A acetylation  response to ethanol  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II repressing transcription factor binding  transcription corepressor activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  replication fork  cytoplasm  cytosol  DNA repair  DNA methylation  chromatin remodeling  transcription, DNA-templated  NuA4 histone acetyltransferase complex  regulation of growth  positive regulation of transcription factor import into nucleus  histone H4 acetylation  histone H2A acetylation  response to ethanol  negative regulation of transcription, DNA-templated  
NDEx NetworkDMAP1
Atlas of Cancer Signalling NetworkDMAP1
Wikipedia pathwaysDMAP1
Orthology - Evolution
OrthoDB55929
GeneTree (enSembl)ENSG00000178028
Phylogenetic Trees/Animal Genes : TreeFamDMAP1
HOVERGENQ9NPF5
HOGENOMQ9NPF5
Homologs : HomoloGeneDMAP1
Homology/Alignments : Family Browser (UCSC)DMAP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMAP1
dbVarDMAP1
ClinVarDMAP1
1000_GenomesDMAP1 
Exome Variant ServerDMAP1
ExAC (Exome Aggregation Consortium)DMAP1 (select the gene name)
Genetic variants : HAPMAP55929
Genomic Variants (DGV)DMAP1 [DGVbeta]
DECIPHERDMAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMAP1 
Mutations
ICGC Data PortalDMAP1 
TCGA Data PortalDMAP1 
Broad Tumor PortalDMAP1
OASIS PortalDMAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMAP1
DgiDB (Drug Gene Interaction Database)DMAP1
DoCM (Curated mutations)DMAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMAP1 (select a term)
intoGenDMAP1
Cancer3DDMAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605077   
Orphanet
MedgenDMAP1
Genetic Testing Registry DMAP1
NextProtQ9NPF5 [Medical]
TSGene55929
GENETestsDMAP1
Huge Navigator DMAP1 [HugePedia]
snp3D : Map Gene to Disease55929
BioCentury BCIQDMAP1
ClinGenDMAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55929
Chemical/Pharm GKB GenePA134927315
Clinical trialDMAP1
Miscellaneous
canSAR (ICR)DMAP1 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMAP1
EVEXDMAP1
GoPubMedDMAP1
iHOPDMAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:13:26 CEST 2017

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