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DMP1 (dentin matrix acidic phosphoprotein 1)

Identity

Alias_namesdentin matrix acidic phosphoprotein
Other aliasARHP
ARHR
DMP-1
HGNC (Hugo) DMP1
LocusID (NCBI) 1758
Atlas_Id 40338
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 87650302 and ends at 87664360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDHR3 (7q22.3) / DMP1 (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMP1   2932
Cards
Entrez_Gene (NCBI)DMP1  1758  dentin matrix acidic phosphoprotein 1
AliasesARHP; ARHR; DMP-1
GeneCards (Weizmann)DMP1
Ensembl hg19 (Hinxton)ENSG00000152592 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152592 [Gene_View]  chr4:87650302-87664360 [Contig_View]  DMP1 [Vega]
ICGC DataPortalENSG00000152592
TCGA cBioPortalDMP1
AceView (NCBI)DMP1
Genatlas (Paris)DMP1
WikiGenes1758
SOURCE (Princeton)DMP1
Genetics Home Reference (NIH)DMP1
Genomic and cartography
GoldenPath hg38 (UCSC)DMP1  -     chr4:87650302-87664360 +  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMP1  -     4q22.1   [Description]    (hg19-Feb_2009)
EnsemblDMP1 - 4q22.1 [CytoView hg19]  DMP1 - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIDMP1 [Mapview hg19]  DMP1 [Mapview hg38]
OMIM241520   600980   
Gene and transcription
Genbank (Entrez)AI371158 BC130581 BC132865 H89203 HQ258290
RefSeq transcript (Entrez)NM_001079911 NM_004407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMP1
Cluster EST : UnigeneHs.652366 [ NCBI ]
CGAP (NCI)Hs.652366
Alternative Splicing GalleryENSG00000152592
Gene ExpressionDMP1 [ NCBI-GEO ]   DMP1 [ EBI - ARRAY_EXPRESS ]   DMP1 [ SEEK ]   DMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)DMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1758
GTEX Portal (Tissue expression)DMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13316   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13316  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13316
Splice isoforms : SwissVarQ13316
PhosPhoSitePlusQ13316
Domains : Interpro (EBI)DMP1   
Domain families : Pfam (Sanger)DMP1 (PF07263)   
Domain families : Pfam (NCBI)pfam07263   
Conserved Domain (NCBI)DMP1
DMDM Disease mutations1758
Blocks (Seattle)DMP1
SuperfamilyQ13316
Human Protein AtlasENSG00000152592
Peptide AtlasQ13316
HPRD02989
IPIIPI00012734   IPI00221365   
Protein Interaction databases
DIP (DOE-UCLA)Q13316
IntAct (EBI)Q13316
FunCoupENSG00000152592
BioGRIDDMP1
STRING (EMBL)DMP1
ZODIACDMP1
Ontologies - Pathways
QuickGOQ13316
Ontology : AmiGOossification  integrin binding  calcium ion binding  extracellular region  proteinaceous extracellular matrix  nucleus  cytoplasm  positive regulation of cell-substrate adhesion  extracellular matrix organization  biomineral tissue development  extracellular matrix binding  regulation of enamel mineralization  
Ontology : EGO-EBIossification  integrin binding  calcium ion binding  extracellular region  proteinaceous extracellular matrix  nucleus  cytoplasm  positive regulation of cell-substrate adhesion  extracellular matrix organization  biomineral tissue development  extracellular matrix binding  regulation of enamel mineralization  
NDEx NetworkDMP1
Atlas of Cancer Signalling NetworkDMP1
Wikipedia pathwaysDMP1
Orthology - Evolution
OrthoDB1758
GeneTree (enSembl)ENSG00000152592
Phylogenetic Trees/Animal Genes : TreeFamDMP1
HOVERGENQ13316
HOGENOMQ13316
Homologs : HomoloGeneDMP1
Homology/Alignments : Family Browser (UCSC)DMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMP1
dbVarDMP1
ClinVarDMP1
1000_GenomesDMP1 
Exome Variant ServerDMP1
ExAC (Exome Aggregation Consortium)DMP1 (select the gene name)
Genetic variants : HAPMAP1758
Genomic Variants (DGV)DMP1 [DGVbeta]
DECIPHERDMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMP1 
Mutations
ICGC Data PortalDMP1 
TCGA Data PortalDMP1 
Broad Tumor PortalDMP1
OASIS PortalDMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Munich Open Variation Database
BioMutasearch DMP1
DgiDB (Drug Gene Interaction Database)DMP1
DoCM (Curated mutations)DMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMP1 (select a term)
intoGenDMP1
Cancer3DDMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM241520    600980   
Orphanet20703   
MedgenDMP1
Genetic Testing Registry DMP1
NextProtQ13316 [Medical]
TSGene1758
GENETestsDMP1
Target ValidationDMP1
Huge Navigator DMP1 [HugePedia]
snp3D : Map Gene to Disease1758
BioCentury BCIQDMP1
ClinGenDMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1758
Chemical/Pharm GKB GenePA27379
Clinical trialDMP1
Miscellaneous
canSAR (ICR)DMP1 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMP1
EVEXDMP1
GoPubMedDMP1
iHOPDMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:31:21 CEST 2017

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