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DMRT3 (doublesex and mab-3 related transcription factor 3)

Identity

Alias_namesDMRTA3
DMRT-like family A3
Other alias
HGNC (Hugo) DMRT3
LocusID (NCBI) 58524
Atlas_Id 51762
Location 9p24.3  [Link to chromosome band 9p24]
Location_base_pair Starts at 976968 and ends at 991732 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMRT3   13909
Cards
Entrez_Gene (NCBI)DMRT3  58524  doublesex and mab-3 related transcription factor 3
AliasesDMRTA3
GeneCards (Weizmann)DMRT3
Ensembl hg19 (Hinxton)ENSG00000064218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064218 [Gene_View]  chr9:976968-991732 [Contig_View]  DMRT3 [Vega]
ICGC DataPortalENSG00000064218
TCGA cBioPortalDMRT3
AceView (NCBI)DMRT3
Genatlas (Paris)DMRT3
WikiGenes58524
SOURCE (Princeton)DMRT3
Genetics Home Reference (NIH)DMRT3
Genomic and cartography
GoldenPath hg38 (UCSC)DMRT3  -     chr9:976968-991732 +  9p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMRT3  -     9p24.3   [Description]    (hg19-Feb_2009)
EnsemblDMRT3 - 9p24.3 [CytoView hg19]  DMRT3 - 9p24.3 [CytoView hg38]
Mapping of homologs : NCBIDMRT3 [Mapview hg19]  DMRT3 [Mapview hg38]
OMIM614754   
Gene and transcription
Genbank (Entrez)AF193873 AF217741 AI052121 AJ301581 BC113584
RefSeq transcript (Entrez)NM_021240
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMRT3
Cluster EST : UnigeneHs.744394 [ NCBI ]
CGAP (NCI)Hs.744394
Alternative Splicing GalleryENSG00000064218
Gene ExpressionDMRT3 [ NCBI-GEO ]   DMRT3 [ EBI - ARRAY_EXPRESS ]   DMRT3 [ SEEK ]   DMRT3 [ MEM ]
Gene Expression Viewer (FireBrowse)DMRT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58524
GTEX Portal (Tissue expression)DMRT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQL9
Splice isoforms : SwissVarQ9NQL9
PhosPhoSitePlusQ9NQL9
Domaine pattern : Prosite (Expaxy)DM_1 (PS40000)    DM_2 (PS50809)   
Domains : Interpro (EBI)DM_DNA-bd    DMA    DMRT/dsx/mab-3    UBA-like   
Domain families : Pfam (Sanger)DM (PF00751)    DMA (PF03474)   
Domain families : Pfam (NCBI)pfam00751    pfam03474   
Domain families : Smart (EMBL)DM (SM00301)  
Conserved Domain (NCBI)DMRT3
DMDM Disease mutations58524
Blocks (Seattle)DMRT3
SuperfamilyQ9NQL9
Human Protein AtlasENSG00000064218
Peptide AtlasQ9NQL9
HPRD16827
IPIIPI00009727   IPI00478592   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQL9
IntAct (EBI)Q9NQL9
FunCoupENSG00000064218
BioGRIDDMRT3
STRING (EMBL)DMRT3
ZODIACDMRT3
Ontologies - Pathways
QuickGOQ9NQL9
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sex differentiation  adult walking behavior  transmission of nerve impulse  ventral spinal cord interneuron specification  regulation of odontogenesis of dentin-containing tooth  sequence-specific DNA binding  male sex differentiation  metal ion binding  protein heterodimerization activity  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sex differentiation  adult walking behavior  transmission of nerve impulse  ventral spinal cord interneuron specification  regulation of odontogenesis of dentin-containing tooth  sequence-specific DNA binding  male sex differentiation  metal ion binding  protein heterodimerization activity  
NDEx NetworkDMRT3
Atlas of Cancer Signalling NetworkDMRT3
Wikipedia pathwaysDMRT3
Orthology - Evolution
OrthoDB58524
GeneTree (enSembl)ENSG00000064218
Phylogenetic Trees/Animal Genes : TreeFamDMRT3
HOVERGENQ9NQL9
HOGENOMQ9NQL9
Homologs : HomoloGeneDMRT3
Homology/Alignments : Family Browser (UCSC)DMRT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRT3
dbVarDMRT3
ClinVarDMRT3
1000_GenomesDMRT3 
Exome Variant ServerDMRT3
ExAC (Exome Aggregation Consortium)DMRT3 (select the gene name)
Genetic variants : HAPMAP58524
Genomic Variants (DGV)DMRT3 [DGVbeta]
DECIPHERDMRT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMRT3 
Mutations
ICGC Data PortalDMRT3 
TCGA Data PortalDMRT3 
Broad Tumor PortalDMRT3
OASIS PortalDMRT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMRT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMRT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRT3
DgiDB (Drug Gene Interaction Database)DMRT3
DoCM (Curated mutations)DMRT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRT3 (select a term)
intoGenDMRT3
Cancer3DDMRT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614754   
Orphanet
MedgenDMRT3
Genetic Testing Registry DMRT3
NextProtQ9NQL9 [Medical]
TSGene58524
GENETestsDMRT3
Target ValidationDMRT3
Huge Navigator DMRT3 [HugePedia]
snp3D : Map Gene to Disease58524
BioCentury BCIQDMRT3
ClinGenDMRT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58524
Chemical/Pharm GKB GenePA27383
Clinical trialDMRT3
Miscellaneous
canSAR (ICR)DMRT3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRT3
EVEXDMRT3
GoPubMedDMRT3
iHOPDMRT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:05:35 CEST 2017

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