Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DMRTA1 (DMRT like family A1)

Identity

Alias_namesDMRT-like family A1
Other aliasDMO
DMRT4
HGNC (Hugo) DMRTA1
LocusID (NCBI) 63951
Atlas_Id 62532
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 22446841 and ends at 22452473 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYNE2 (14q23.2) / DMRTA1 (9p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMRTA1   13826
Cards
Entrez_Gene (NCBI)DMRTA1  63951  DMRT like family A1
AliasesDMO; DMRT4
GeneCards (Weizmann)DMRTA1
Ensembl hg19 (Hinxton)ENSG00000176399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176399 [Gene_View]  ENSG00000176399 [Sequence]  chr9:22446841-22452473 [Contig_View]  DMRTA1 [Vega]
ICGC DataPortalENSG00000176399
TCGA cBioPortalDMRTA1
AceView (NCBI)DMRTA1
Genatlas (Paris)DMRTA1
WikiGenes63951
SOURCE (Princeton)DMRTA1
Genetics Home Reference (NIH)DMRTA1
Genomic and cartography
GoldenPath hg38 (UCSC)DMRTA1  -     chr9:22446841-22452473 +  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMRTA1  -     9p21.3   [Description]    (hg19-Feb_2009)
GoldenPathDMRTA1 - 9p21.3 [CytoView hg19]  DMRTA1 - 9p21.3 [CytoView hg38]
ImmunoBaseENSG00000176399
Mapping of homologs : NCBIDMRTA1 [Mapview hg19]  DMRTA1 [Mapview hg38]
OMIM614803   
Gene and transcription
Genbank (Entrez)AJ290954 AK096011 AK130018 BC130435 BC130437
RefSeq transcript (Entrez)NM_022160
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMRTA1
Cluster EST : UnigeneHs.371976 [ NCBI ]
CGAP (NCI)Hs.371976
Alternative Splicing GalleryENSG00000176399
Gene ExpressionDMRTA1 [ NCBI-GEO ]   DMRTA1 [ EBI - ARRAY_EXPRESS ]   DMRTA1 [ SEEK ]   DMRTA1 [ MEM ]
Gene Expression Viewer (FireBrowse)DMRTA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63951
GTEX Portal (Tissue expression)DMRTA1
Human Protein AtlasENSG00000176399-DMRTA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZB9
Splice isoforms : SwissVarQ5VZB9
PhosPhoSitePlusQ5VZB9
Domaine pattern : Prosite (Expaxy)DM_1 (PS40000)    DM_2 (PS50809)   
Domains : Interpro (EBI)DM_DNA-bd    DM_DNA-bd_sf    DMA    DMRT/dsx/mab-3    UBA-like_sf   
Domain families : Pfam (Sanger)DM (PF00751)    DMA (PF03474)   
Domain families : Pfam (NCBI)pfam00751    pfam03474   
Domain families : Smart (EMBL)DM (SM00301)  
Conserved Domain (NCBI)DMRTA1
DMDM Disease mutations63951
Blocks (Seattle)DMRTA1
SuperfamilyQ5VZB9
Human Protein Atlas [tissue]ENSG00000176399-DMRTA1 [tissue]
Peptide AtlasQ5VZB9
HPRD10913
IPIIPI00298421   IPI00977695   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZB9
IntAct (EBI)Q5VZB9
FunCoupENSG00000176399
BioGRIDDMRTA1
STRING (EMBL)DMRTA1
ZODIACDMRTA1
Ontologies - Pathways
QuickGOQ5VZB9
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  ovarian follicle development  nucleus  regulation of transcription by RNA polymerase II  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  male mating behavior  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  ovarian follicle development  nucleus  regulation of transcription by RNA polymerase II  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  male mating behavior  
NDEx NetworkDMRTA1
Atlas of Cancer Signalling NetworkDMRTA1
Wikipedia pathwaysDMRTA1
Orthology - Evolution
OrthoDB63951
GeneTree (enSembl)ENSG00000176399
Phylogenetic Trees/Animal Genes : TreeFamDMRTA1
HOGENOMQ5VZB9
Homologs : HomoloGeneDMRTA1
Homology/Alignments : Family Browser (UCSC)DMRTA1
Gene fusions - Rearrangements
Fusion : QuiverDMRTA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRTA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRTA1
dbVarDMRTA1
ClinVarDMRTA1
1000_GenomesDMRTA1 
Exome Variant ServerDMRTA1
ExAC (Exome Aggregation Consortium)ENSG00000176399
GNOMAD BrowserENSG00000176399
Varsome BrowserDMRTA1
Genetic variants : HAPMAP63951
Genomic Variants (DGV)DMRTA1 [DGVbeta]
DECIPHERDMRTA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMRTA1 
Mutations
ICGC Data PortalDMRTA1 
TCGA Data PortalDMRTA1 
Broad Tumor PortalDMRTA1
OASIS PortalDMRTA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMRTA1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDMRTA1
Mutations and Diseases : HGMDDMRTA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRTA1
DgiDB (Drug Gene Interaction Database)DMRTA1
DoCM (Curated mutations)DMRTA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRTA1 (select a term)
intoGenDMRTA1
Cancer3DDMRTA1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614803   
Orphanet
DisGeNETDMRTA1
MedgenDMRTA1
Genetic Testing Registry DMRTA1
NextProtQ5VZB9 [Medical]
TSGene63951
GENETestsDMRTA1
Target ValidationDMRTA1
Huge Navigator DMRTA1 [HugePedia]
snp3D : Map Gene to Disease63951
BioCentury BCIQDMRTA1
ClinGenDMRTA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63951
Chemical/Pharm GKB GenePA27384
Clinical trialDMRTA1
Miscellaneous
canSAR (ICR)DMRTA1 (select the gene name)
DataMed IndexDMRTA1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRTA1
EVEXDMRTA1
GoPubMedDMRTA1
iHOPDMRTA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 12 16:11:23 CEST 2019

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