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DMRTA1 (DMRT-like family A1)

Identity

Alias_namesDMRT-like family A1
Other aliasDMO
DMRT4
HGNC (Hugo) DMRTA1
LocusID (NCBI) 63951
Atlas_Id 62532
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 22446840 and ends at 22452472 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SYNE2 (14q23.2) / DMRTA1 (9p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMRTA1   13826
Cards
Entrez_Gene (NCBI)DMRTA1  63951  DMRT-like family A1
AliasesDMO; DMRT4
GeneCards (Weizmann)DMRTA1
Ensembl hg19 (Hinxton) [Gene_View]  chr9:22446840-22452472 [Contig_View]  DMRTA1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:22446840-22452472 [Contig_View]  DMRTA1 [Vega]
TCGA cBioPortalDMRTA1
AceView (NCBI)DMRTA1
Genatlas (Paris)DMRTA1
WikiGenes63951
SOURCE (Princeton)DMRTA1
Genetics Home Reference (NIH)DMRTA1
Genomic and cartography
GoldenPath hg19 (UCSC)DMRTA1  -     chr9:22446840-22452472 +  9p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DMRTA1  -     9p21.3   [Description]    (hg38-Dec_2013)
EnsemblDMRTA1 - 9p21.3 [CytoView hg19]  DMRTA1 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIDMRTA1 [Mapview hg19]  DMRTA1 [Mapview hg38]
OMIM614803   
Gene and transcription
Genbank (Entrez)AJ290954 AK096011 AK130018 BC130435 BC130437
RefSeq transcript (Entrez)NM_022160
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)DMRTA1
Cluster EST : UnigeneHs.371976 [ NCBI ]
CGAP (NCI)Hs.371976
Gene ExpressionDMRTA1 [ NCBI-GEO ]   DMRTA1 [ EBI - ARRAY_EXPRESS ]   DMRTA1 [ SEEK ]   DMRTA1 [ MEM ]
Gene Expression Viewer (FireBrowse)DMRTA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63951
GTEX Portal (Tissue expression)DMRTA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZB9
Splice isoforms : SwissVarQ5VZB9
PhosPhoSitePlusQ5VZB9
Domaine pattern : Prosite (Expaxy)DM_1 (PS40000)    DM_2 (PS50809)   
Domains : Interpro (EBI)DM_DNA-bd    DMA    DMRT/dsx/mab-3    UBA-like   
Domain families : Pfam (Sanger)DM (PF00751)    DMA (PF03474)   
Domain families : Pfam (NCBI)pfam00751    pfam03474   
Domain families : Smart (EMBL)DM (SM00301)  
Conserved Domain (NCBI)DMRTA1
DMDM Disease mutations63951
Blocks (Seattle)DMRTA1
SuperfamilyQ5VZB9
Peptide AtlasQ5VZB9
HPRD10913
IPIIPI00298421   IPI00977695   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZB9
IntAct (EBI)Q5VZB9
BioGRIDDMRTA1
STRING (EMBL)DMRTA1
ZODIACDMRTA1
Ontologies - Pathways
QuickGOQ5VZB9
Ontology : AmiGOcore promoter proximal region sequence-specific DNA binding  ovarian follicle development  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sex differentiation  protein homodimerization activity  metal ion binding  male mating behavior  
Ontology : EGO-EBIcore promoter proximal region sequence-specific DNA binding  ovarian follicle development  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sex differentiation  protein homodimerization activity  metal ion binding  male mating behavior  
NDEx NetworkDMRTA1
Atlas of Cancer Signalling NetworkDMRTA1
Wikipedia pathwaysDMRTA1
Orthology - Evolution
OrthoDB63951
Phylogenetic Trees/Animal Genes : TreeFamDMRTA1
HOVERGENQ5VZB9
HOGENOMQ5VZB9
Homologs : HomoloGeneDMRTA1
Homology/Alignments : Family Browser (UCSC)DMRTA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRTA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRTA1
dbVarDMRTA1
ClinVarDMRTA1
1000_GenomesDMRTA1 
Exome Variant ServerDMRTA1
ExAC (Exome Aggregation Consortium)DMRTA1 (select the gene name)
Genetic variants : HAPMAP63951
Genomic Variants (DGV)DMRTA1 [DGVbeta]
DECIPHER (Syndromes)9:22446840-22452472  
CONAN: Copy Number AnalysisDMRTA1 
Mutations
ICGC Data PortalDMRTA1 
TCGA Data PortalDMRTA1 
Broad Tumor PortalDMRTA1
OASIS PortalDMRTA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMRTA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMRTA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRTA1
DgiDB (Drug Gene Interaction Database)DMRTA1
DoCM (Curated mutations)DMRTA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRTA1 (select a term)
intoGenDMRTA1
Cancer3DDMRTA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614803   
Orphanet
MedgenDMRTA1
Genetic Testing Registry DMRTA1
NextProtQ5VZB9 [Medical]
TSGene63951
GENETestsDMRTA1
Huge Navigator DMRTA1 [HugePedia]
snp3D : Map Gene to Disease63951
BioCentury BCIQDMRTA1
ClinGenDMRTA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63951
Chemical/Pharm GKB GenePA27384
Clinical trialDMRTA1
Miscellaneous
canSAR (ICR)DMRTA1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRTA1
EVEXDMRTA1
GoPubMedDMRTA1
iHOPDMRTA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:52 CET 2017

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