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DMRTA2 (DMRT like family A2)

Identity

Alias_namesDMRT-like family A2
Other alias-
HGNC (Hugo) DMRTA2
LocusID (NCBI) 63950
Atlas_Id 56070
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 50417551 and ends at 50423447 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMRTA2   13908
Cards
Entrez_Gene (NCBI)DMRTA2  63950  DMRT like family A2
Aliases
GeneCards (Weizmann)DMRTA2
Ensembl hg19 (Hinxton)ENSG00000142700 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142700 [Gene_View]  chr1:50417551-50423447 [Contig_View]  DMRTA2 [Vega]
ICGC DataPortalENSG00000142700
TCGA cBioPortalDMRTA2
AceView (NCBI)DMRTA2
Genatlas (Paris)DMRTA2
WikiGenes63950
SOURCE (Princeton)DMRTA2
Genetics Home Reference (NIH)DMRTA2
Genomic and cartography
GoldenPath hg38 (UCSC)DMRTA2  -     chr1:50417551-50423447 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMRTA2  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblDMRTA2 - 1p32.3 [CytoView hg19]  DMRTA2 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIDMRTA2 [Mapview hg19]  DMRTA2 [Mapview hg38]
OMIM614804   
Gene and transcription
Genbank (Entrez)AI492131 AJ301580 BC136282 BC143800 BM675521
RefSeq transcript (Entrez)NM_032110
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMRTA2
Cluster EST : UnigeneHs.334481 [ NCBI ]
CGAP (NCI)Hs.334481
Alternative Splicing GalleryENSG00000142700
Gene ExpressionDMRTA2 [ NCBI-GEO ]   DMRTA2 [ EBI - ARRAY_EXPRESS ]   DMRTA2 [ SEEK ]   DMRTA2 [ MEM ]
Gene Expression Viewer (FireBrowse)DMRTA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63950
GTEX Portal (Tissue expression)DMRTA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SC8
Splice isoforms : SwissVarQ96SC8
PhosPhoSitePlusQ96SC8
Domaine pattern : Prosite (Expaxy)DM_1 (PS40000)    DM_2 (PS50809)   
Domains : Interpro (EBI)DM_DNA-bd    DMA    DMRT/dsx/mab-3    UBA-like   
Domain families : Pfam (Sanger)DM (PF00751)    DMA (PF03474)   
Domain families : Pfam (NCBI)pfam00751    pfam03474   
Domain families : Smart (EMBL)DM (SM00301)  
Conserved Domain (NCBI)DMRTA2
DMDM Disease mutations63950
Blocks (Seattle)DMRTA2
SuperfamilyQ96SC8
Human Protein AtlasENSG00000142700
Peptide AtlasQ96SC8
IPIIPI00045565   IPI00940287   
Protein Interaction databases
DIP (DOE-UCLA)Q96SC8
IntAct (EBI)Q96SC8
FunCoupENSG00000142700
BioGRIDDMRTA2
STRING (EMBL)DMRTA2
ZODIACDMRTA2
Ontologies - Pathways
QuickGOQ96SC8
Ontology : AmiGOpositive regulation of neuroblast proliferation  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription, DNA-templated  brain development  cerebral cortex regionalization  skeletal muscle cell differentiation  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  protein heterodimerization activity  neuron fate specification  dopaminergic neuron differentiation  
Ontology : EGO-EBIpositive regulation of neuroblast proliferation  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription, DNA-templated  brain development  cerebral cortex regionalization  skeletal muscle cell differentiation  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  protein heterodimerization activity  neuron fate specification  dopaminergic neuron differentiation  
NDEx NetworkDMRTA2
Atlas of Cancer Signalling NetworkDMRTA2
Wikipedia pathwaysDMRTA2
Orthology - Evolution
OrthoDB63950
GeneTree (enSembl)ENSG00000142700
Phylogenetic Trees/Animal Genes : TreeFamDMRTA2
HOVERGENQ96SC8
HOGENOMQ96SC8
Homologs : HomoloGeneDMRTA2
Homology/Alignments : Family Browser (UCSC)DMRTA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRTA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRTA2
dbVarDMRTA2
ClinVarDMRTA2
1000_GenomesDMRTA2 
Exome Variant ServerDMRTA2
ExAC (Exome Aggregation Consortium)DMRTA2 (select the gene name)
Genetic variants : HAPMAP63950
Genomic Variants (DGV)DMRTA2 [DGVbeta]
DECIPHERDMRTA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMRTA2 
Mutations
ICGC Data PortalDMRTA2 
TCGA Data PortalDMRTA2 
Broad Tumor PortalDMRTA2
OASIS PortalDMRTA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMRTA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMRTA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRTA2
DgiDB (Drug Gene Interaction Database)DMRTA2
DoCM (Curated mutations)DMRTA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRTA2 (select a term)
intoGenDMRTA2
Cancer3DDMRTA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614804   
Orphanet
MedgenDMRTA2
Genetic Testing Registry DMRTA2
NextProtQ96SC8 [Medical]
TSGene63950
GENETestsDMRTA2
Huge Navigator DMRTA2 [HugePedia]
snp3D : Map Gene to Disease63950
BioCentury BCIQDMRTA2
ClinGenDMRTA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63950
Chemical/Pharm GKB GenePA27385
Clinical trialDMRTA2
Miscellaneous
canSAR (ICR)DMRTA2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRTA2
EVEXDMRTA2
GoPubMedDMRTA2
iHOPDMRTA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:13:28 CEST 2017

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