Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DMRTC1 (DMRT like family C1)

Identity

Alias_namesDMRT-like family C1
Other alias-
HGNC (Hugo) DMRTC1
LocusID (NCBI) 63947
Atlas_Id 62535
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 72845042 and ends at 72848802 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMRTC1   13910
Cards
Entrez_Gene (NCBI)DMRTC1  63947  DMRT like family C1
Aliases
GeneCards (Weizmann)DMRTC1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:72845042-72848802 [Contig_View]  DMRTC1 [Vega]
TCGA cBioPortalDMRTC1
AceView (NCBI)DMRTC1
Genatlas (Paris)DMRTC1
WikiGenes63947
SOURCE (Princeton)DMRTC1
Genetics Home Reference (NIH)DMRTC1
Genomic and cartography
GoldenPath hg38 (UCSC)DMRTC1  -     chrX:72845042-72848802 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMRTC1  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblDMRTC1 - Xq13.1 [CytoView hg19]  DMRTC1 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIDMRTC1 [Mapview hg19]  DMRTC1 [Mapview hg38]
OMIM300878   
Gene and transcription
Genbank (Entrez)AJ291670 AV753283 AW205069 BC029799 BC047596
RefSeq transcript (Entrez)NM_033053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMRTC1
Cluster EST : UnigeneHs.712728 [ NCBI ]
CGAP (NCI)Hs.712728
Gene ExpressionDMRTC1 [ NCBI-GEO ]   DMRTC1 [ EBI - ARRAY_EXPRESS ]   DMRTC1 [ SEEK ]   DMRTC1 [ MEM ]
Gene Expression Viewer (FireBrowse)DMRTC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63947
GTEX Portal (Tissue expression)DMRTC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYR2
Splice isoforms : SwissVarQ5HYR2
PhosPhoSitePlusQ5HYR2
Domains : Interpro (EBI)DMRT-C1/C2_C    DMRT/dsx/mab-3   
Domain families : Pfam (Sanger)DMRT-like (PF15791)   
Domain families : Pfam (NCBI)pfam15791   
Conserved Domain (NCBI)DMRTC1
DMDM Disease mutations63947
Blocks (Seattle)DMRTC1
SuperfamilyQ5HYR2
Peptide AtlasQ5HYR2
HPRD06491
IPIIPI00297378   IPI00337807   IPI01011253   IPI00852781   IPI00883913   IPI00979040   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYR2
IntAct (EBI)Q5HYR2
BioGRIDDMRTC1
STRING (EMBL)DMRTC1
ZODIACDMRTC1
Ontologies - Pathways
QuickGOQ5HYR2
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkDMRTC1
Atlas of Cancer Signalling NetworkDMRTC1
Wikipedia pathwaysDMRTC1
Orthology - Evolution
OrthoDB63947
Phylogenetic Trees/Animal Genes : TreeFamDMRTC1
HOVERGENQ5HYR2
HOGENOMQ5HYR2
Homologs : HomoloGeneDMRTC1
Homology/Alignments : Family Browser (UCSC)DMRTC1
Gene fusions - Rearrangements
Tumor Fusion PortalDMRTC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRTC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRTC1
dbVarDMRTC1
ClinVarDMRTC1
1000_GenomesDMRTC1 
Exome Variant ServerDMRTC1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP63947
Genomic Variants (DGV)DMRTC1 [DGVbeta]
DECIPHERDMRTC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMRTC1 
Mutations
ICGC Data PortalDMRTC1 
TCGA Data PortalDMRTC1 
Broad Tumor PortalDMRTC1
OASIS PortalDMRTC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDMRTC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRTC1
DgiDB (Drug Gene Interaction Database)DMRTC1
DoCM (Curated mutations)DMRTC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRTC1 (select a term)
intoGenDMRTC1
Cancer3DDMRTC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300878   
Orphanet
DisGeNETDMRTC1
MedgenDMRTC1
Genetic Testing Registry DMRTC1
NextProtQ5HYR2 [Medical]
TSGene63947
GENETestsDMRTC1
Target ValidationDMRTC1
Huge Navigator DMRTC1 [HugePedia]
snp3D : Map Gene to Disease63947
BioCentury BCIQDMRTC1
ClinGenDMRTC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63947
Chemical/Pharm GKB GenePA27387
Clinical trialDMRTC1
Miscellaneous
canSAR (ICR)DMRTC1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRTC1
EVEXDMRTC1
GoPubMedDMRTC1
iHOPDMRTC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:26:36 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.