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DMRTC1B (DMRT like family C1B)

Identity

Alias_namesDMRT-like family C1B
Other alias-
HGNC (Hugo) DMRTC1B
LocusID (NCBI) 728656
Atlas_Id 62536
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 72845042 and ends at 72848802 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMRTC1B   31686
Cards
Entrez_Gene (NCBI)DMRTC1B  728656  DMRT like family C1B
Aliases
GeneCards (Weizmann)DMRTC1B
Ensembl hg19 (Hinxton)ENSG00000184911 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184911 [Gene_View]  chrX:72845042-72848802 [Contig_View]  DMRTC1B [Vega]
ICGC DataPortalENSG00000184911
TCGA cBioPortalDMRTC1B
AceView (NCBI)DMRTC1B
Genatlas (Paris)DMRTC1B
WikiGenes728656
SOURCE (Princeton)DMRTC1B
Genetics Home Reference (NIH)DMRTC1B
Genomic and cartography
GoldenPath hg38 (UCSC)DMRTC1B  -     chrX:72845042-72848802 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMRTC1B  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblDMRTC1B - Xq13.1 [CytoView hg19]  DMRTC1B - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIDMRTC1B [Mapview hg19]  DMRTC1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ291670 BC029799 BC047596
RefSeq transcript (Entrez)NM_001080851
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMRTC1B
Cluster EST : UnigeneHs.712728 [ NCBI ]
CGAP (NCI)Hs.712728
Alternative Splicing GalleryENSG00000184911
Gene ExpressionDMRTC1B [ NCBI-GEO ]   DMRTC1B [ EBI - ARRAY_EXPRESS ]   DMRTC1B [ SEEK ]   DMRTC1B [ MEM ]
Gene Expression Viewer (FireBrowse)DMRTC1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728656
GTEX Portal (Tissue expression)DMRTC1B
Human Protein AtlasENSG00000184911-DMRTC1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYR2
Splice isoforms : SwissVarQ5HYR2
PhosPhoSitePlusQ5HYR2
Domains : Interpro (EBI)DMRT-C1/C2_C    DMRT/dsx/mab-3   
Domain families : Pfam (Sanger)DMRT-like (PF15791)   
Domain families : Pfam (NCBI)pfam15791   
Conserved Domain (NCBI)DMRTC1B
DMDM Disease mutations728656
Blocks (Seattle)DMRTC1B
SuperfamilyQ5HYR2
Human Protein Atlas [tissue]ENSG00000184911-DMRTC1B [tissue]
Peptide AtlasQ5HYR2
Protein Interaction databases
DIP (DOE-UCLA)Q5HYR2
IntAct (EBI)Q5HYR2
FunCoupENSG00000184911
BioGRIDDMRTC1B
STRING (EMBL)DMRTC1B
ZODIACDMRTC1B
Ontologies - Pathways
QuickGOQ5HYR2
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkDMRTC1B
Atlas of Cancer Signalling NetworkDMRTC1B
Wikipedia pathwaysDMRTC1B
Orthology - Evolution
OrthoDB728656
GeneTree (enSembl)ENSG00000184911
Phylogenetic Trees/Animal Genes : TreeFamDMRTC1B
HOVERGENQ5HYR2
HOGENOMQ5HYR2
Homologs : HomoloGeneDMRTC1B
Homology/Alignments : Family Browser (UCSC)DMRTC1B
Gene fusions - Rearrangements
Tumor Fusion PortalDMRTC1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRTC1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRTC1B
dbVarDMRTC1B
ClinVarDMRTC1B
1000_GenomesDMRTC1B 
Exome Variant ServerDMRTC1B
ExAC (Exome Aggregation Consortium)ENSG00000184911
GNOMAD BrowserENSG00000184911
Genetic variants : HAPMAP728656
Genomic Variants (DGV)DMRTC1B [DGVbeta]
DECIPHERDMRTC1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMRTC1B 
Mutations
ICGC Data PortalDMRTC1B 
TCGA Data PortalDMRTC1B 
Broad Tumor PortalDMRTC1B
OASIS PortalDMRTC1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMRTC1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMRTC1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRTC1B
DgiDB (Drug Gene Interaction Database)DMRTC1B
DoCM (Curated mutations)DMRTC1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRTC1B (select a term)
intoGenDMRTC1B
Cancer3DDMRTC1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDMRTC1B
MedgenDMRTC1B
Genetic Testing Registry DMRTC1B
NextProtQ5HYR2 [Medical]
TSGene728656
GENETestsDMRTC1B
Target ValidationDMRTC1B
Huge Navigator DMRTC1B [HugePedia]
snp3D : Map Gene to Disease728656
BioCentury BCIQDMRTC1B
ClinGenDMRTC1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728656
Chemical/Pharm GKB GenePA162383779
Clinical trialDMRTC1B
Miscellaneous
canSAR (ICR)DMRTC1B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRTC1B
EVEXDMRTC1B
GoPubMedDMRTC1B
iHOPDMRTC1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:59:26 CET 2017

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