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DMRTC2 (DMRT like family C2)

Identity

Alias_namesDMRT-like family C2
Other alias-
HGNC (Hugo) DMRTC2
LocusID (NCBI) 63946
Atlas_Id 62537
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41845023 and ends at 41852329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPS19 (19q13.2) / DMRTC2 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMRTC2   13911
Cards
Entrez_Gene (NCBI)DMRTC2  63946  DMRT like family C2
Aliases
GeneCards (Weizmann)DMRTC2
Ensembl hg19 (Hinxton)ENSG00000142025 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142025 [Gene_View]  chr19:41845023-41852329 [Contig_View]  DMRTC2 [Vega]
ICGC DataPortalENSG00000142025
TCGA cBioPortalDMRTC2
AceView (NCBI)DMRTC2
Genatlas (Paris)DMRTC2
WikiGenes63946
SOURCE (Princeton)DMRTC2
Genetics Home Reference (NIH)DMRTC2
Genomic and cartography
GoldenPath hg38 (UCSC)DMRTC2  -     chr19:41845023-41852329 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMRTC2  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblDMRTC2 - 19q13.2 [CytoView hg19]  DMRTC2 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIDMRTC2 [Mapview hg19]  DMRTC2 [Mapview hg38]
OMIM614806   
Gene and transcription
Genbank (Entrez)AJ291669 AK057404 AK301822 BC029202 BC039266
RefSeq transcript (Entrez)NM_001040283 NM_033052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMRTC2
Cluster EST : UnigeneHs.350507 [ NCBI ]
CGAP (NCI)Hs.350507
Alternative Splicing GalleryENSG00000142025
Gene ExpressionDMRTC2 [ NCBI-GEO ]   DMRTC2 [ EBI - ARRAY_EXPRESS ]   DMRTC2 [ SEEK ]   DMRTC2 [ MEM ]
Gene Expression Viewer (FireBrowse)DMRTC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63946
GTEX Portal (Tissue expression)DMRTC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXT2
Splice isoforms : SwissVarQ8IXT2
PhosPhoSitePlusQ8IXT2
Domaine pattern : Prosite (Expaxy)DM_1 (PS40000)    DM_2 (PS50809)   
Domains : Interpro (EBI)DM_DNA-bd    DMRT-C1/C2_C    DMRT/dsx/mab-3   
Domain families : Pfam (Sanger)DM (PF00751)    DMRT-like (PF15791)   
Domain families : Pfam (NCBI)pfam00751    pfam15791   
Domain families : Smart (EMBL)DM (SM00301)  
Conserved Domain (NCBI)DMRTC2
DMDM Disease mutations63946
Blocks (Seattle)DMRTC2
SuperfamilyQ8IXT2
Human Protein AtlasENSG00000142025
Peptide AtlasQ8IXT2
HPRD16829
IPIIPI00646234   IPI00480036   IPI00909986   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXT2
IntAct (EBI)Q8IXT2
FunCoupENSG00000142025
BioGRIDDMRTC2
STRING (EMBL)DMRTC2
ZODIACDMRTC2
Ontologies - Pathways
QuickGOQ8IXT2
Ontology : AmiGOXY body  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  male meiosis I  spermatid nucleus elongation  sex differentiation  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  positive regulation of histone H3-K9 dimethylation  positive regulation of histone H3-K9 trimethylation  
Ontology : EGO-EBIXY body  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  male meiosis I  spermatid nucleus elongation  sex differentiation  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  positive regulation of histone H3-K9 dimethylation  positive regulation of histone H3-K9 trimethylation  
NDEx NetworkDMRTC2
Atlas of Cancer Signalling NetworkDMRTC2
Wikipedia pathwaysDMRTC2
Orthology - Evolution
OrthoDB63946
GeneTree (enSembl)ENSG00000142025
Phylogenetic Trees/Animal Genes : TreeFamDMRTC2
HOVERGENQ8IXT2
HOGENOMQ8IXT2
Homologs : HomoloGeneDMRTC2
Homology/Alignments : Family Browser (UCSC)DMRTC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRTC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRTC2
dbVarDMRTC2
ClinVarDMRTC2
1000_GenomesDMRTC2 
Exome Variant ServerDMRTC2
ExAC (Exome Aggregation Consortium)DMRTC2 (select the gene name)
Genetic variants : HAPMAP63946
Genomic Variants (DGV)DMRTC2 [DGVbeta]
DECIPHERDMRTC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMRTC2 
Mutations
ICGC Data PortalDMRTC2 
TCGA Data PortalDMRTC2 
Broad Tumor PortalDMRTC2
OASIS PortalDMRTC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMRTC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMRTC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRTC2
DgiDB (Drug Gene Interaction Database)DMRTC2
DoCM (Curated mutations)DMRTC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRTC2 (select a term)
intoGenDMRTC2
Cancer3DDMRTC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614806   
Orphanet
MedgenDMRTC2
Genetic Testing Registry DMRTC2
NextProtQ8IXT2 [Medical]
TSGene63946
GENETestsDMRTC2
Target ValidationDMRTC2
Huge Navigator DMRTC2 [HugePedia]
snp3D : Map Gene to Disease63946
BioCentury BCIQDMRTC2
ClinGenDMRTC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63946
Chemical/Pharm GKB GenePA27388
Clinical trialDMRTC2
Miscellaneous
canSAR (ICR)DMRTC2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRTC2
EVEXDMRTC2
GoPubMedDMRTC2
iHOPDMRTC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:06 CEST 2017

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