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DMTF1 (cyclin D binding myb-like transcription factor 1)

Identity

Other namesDMP1
DMTF
HGNC (Hugo) DMTF1
LocusID (NCBI) 9988
Location 7q21.12
Location_base_pair Starts at 86781677 and ends at 86825648 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order Centromere--- GRM3 - KIAA1324L - DMTF1 - MGC4175 - CROT - ABCB4 - ABCB1 ---Telomere

DNA/RNA

Note There are at least three splicing variants for hDMTF1 alpha, beta and gamma.
 
  The human DMTF1 genomic locus. DMTF1 consists of 20 exons and a gene named MGC4175 is localized at its 3' end in a reverse orientation.
Description 20 Exons.
Transcription Major transcript: 3.9kb (human) (and 3.75kb in the mouse).
Pseudogene In mus musculus, the pseudogene of Dmtf1 exists on chromosome XE3.
NT 039716, gi:149272292.

Protein

Note The human DMTF1alpha protein consists of 760 amino acids; DMTF1beta, 272 amino acids; and DMTF1gamma, 285 amino acids. Mouse Dmp1 consists of 761 amino acids.
 
  Proteins generated from splicing variants of the human DMTF1 gene. The hDMTF1 beta and gamma isoforms lack most of the Myb-like repeats and the principal transactivation domains, and thus, they do not bind to DNA.
Description Dmtf1 is a MYB-like transcription factor isolated in a yeast two-hybrid screen of a mouse T lymphocyte library with cyclin D2 bait. It binds to a consensus sequence CCCG(G/T)ATG(T/C) that is also recognized by Ets family proteins. DMTF1 is a novel tumor suppressor that receives signals from oncogenic RAS and activates the ARF - P53 pathway. D-type cyclins antagonize the activity of Dmtf1 when E2F sites are not on the promoter; however, they synergize with Dmtf1 on the Arf promoter. Recent study shows significant involvement of DMTF1 in human non-small-cell lung carcinomas.
Expression Mouse Dmtf1 protein is expressed in the testis, thymus, spleen, brain, lung, and kidney.
Localisation Both human and mouse DMTF1 alpha proteins are localized in the nucleus.
Function Dmtf1-null mice are prone to spontaneous tumor development, which was accelerated when the animals were neonatally treated with ionizing radiation or dimethylbenzanthracene. Lung adenomas/adenocarcinomas were the most common tumors found in Dmtf1-deficient mice. Eµ-Myc-induced lymphomagenesis was significantly accelerated in Dmtf1-deficient mice. The retention and expression of the wild-type Dmtf1 allele in tumors arising in heterozygotes indicated that Dmtf1 is haplo-insufficient for tumor suppression. The low frequency of Arf deletion and p53 mutation in tumors from Dmtf1-knockout mice suggested that Dmtf1 is a physiological regulator of the Arf-p53 pathway in vivo.
The DMTF1 promoter is activated by the oncogenic RAS - RAF - MEK - ERK - JUN pathway, and the induction of ARF by RAS is DMTF1-dependent. Thus, DMTF1 is a critical mediator of p19ARF in response to oncogenic RAS signaling. The importance of dmp1 in P53 regulation was recently demonstrated by crossing Dmtf1-deficient mice with K-rasLA transgenic mice. The Dmtf1 promoter is repressed by overexpression of E2Fs and also by physiological mitogenic signaling. Thus, DMTF1 is a marker of cells that have exited from the cell cycle. The DMTF1 promoter is repressed by genotoxic stimuli mediated by NF-kappa B, and repression of the ARF promoter by genotoxic stimuli is DMP1-dependent. Very little studies have been conducted on the post-translational modifications for DMTF1.
Homology Human DMTF1 vs. mouse Dmtf1: 95% (723/761), positives 97% (739/761) at the amino acids level.
Mouse Dmtf1 vs. mouse TTF-1 (transcription termination factor 1): Identities 29% (90/309), positives 47% (148/309).
Mouse Dmtf1 vs. mouse C-myb: Identities 32% (23/71), positives 54% (39/71).
Mouse Dmtf1 vs. mouse A-myb: Identities 29% (31/106), positives 50% (54/106).
Mouse Dmtf1 vs. mouse B-myb: Identities 27% (22/80), positives 53% (43/80)

Mutations

Note Point mutations for human DMTF1 in human cancer or other human disorders have not been reported.
Promoter hypermethylation for the hDMTF1 promoter is very rare ( around 2%) in human non-small-cell lung carcinomas.
Single nucleotide polymorphisms for hDMTF1 are shown in http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?locusId=9988.
Germinal N/A.
Somatic N/A.

Implicated in

Entity Non-small-cell lung carcinoma
Disease One report shows that loss of heterozygosity (LOH) for the human DMTF1 gene was found in around 35 % of human non-small-cell lung cancers, especially those without deletions or methylation of p14ARF and/or mutations of p53. NSCLC with LOH for hDMTF1 showed significantly weaker nuclear staining for DMTF1 protein than tumors without LOH.
Prognosis The correlation between LOH for hDMTF1 and the prognoses of non-small-cell lung cancer patients has not been reported.
Hybrid/Mutated Gene Not reported.
Abnormal Protein Not reported.
Oncogenesis N/A
  
Entity Hematopoietic malignancies involving chromosome del(7q)
Prognosis The prognoses of human leukemias with del(7q) abnormalities are generally poor.
Cytogenetics One allele of the hDMTF1 locus was deleted in 9 of 9 leukemic cells with chromosome 7q abnormalities by FISH analysis, regardless of the detailed karyotype at 7q, suggesting that mono-allelic loss of hDMTF1 could contribute to 7q- leukemias.
Hybrid/Mutated Gene Not reported.
Abnormal Protein Not reported.
Oncogenesis N/A
  

External links

Nomenclature
HGNC (Hugo)DMTF1   14603
Entrez_Gene (NCBI)DMTF1  9988  cyclin D binding myb-like transcription factor 1
Cards
AtlasDMTF1ID40340ch7q21
GeneCards (Weizmann)DMTF1
Ensembl (Hinxton)ENSG00000135164 [Gene_View]  chr7:86781677-86825648 [Contig_View]  DMTF1 [Vega]
AceView (NCBI)DMTF1
Genatlas (Paris)DMTF1
SOURCE (Stanford)NM_001142326 NM_001142327 NM_021145
Genomic and cartography
GoldenPath (UCSC)DMTF1  -  7q21.12   chr7:86781677-86825648 +  7q21   [Description]    (hg19-Feb_2009)
EnsemblDMTF1 - 7q21 [CytoView]
Mapping of homologs : NCBIDMTF1 [Mapview]
OMIM608491   
Gene and transcription
Genbank (Entrez)AA258783 AB209230 AF052102 AF084530 AF202144
RefSeq transcript (SRS)NM_001142326 NM_001142327 NM_021145
RefSeq transcript (Entrez)NM_001142326 NM_001142327 NM_021145
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NG_029536 NT_007933 NT_079595 NW_001839064 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NG_029536 NT_007933 NT_079595 NW_001839064 NW_004078032
Consensus coding sequences : CCDS (NCBI)DMTF1
Cluster EST : UnigeneHs.196129 [ SRS ] Hs.196129 [ NCBI ]
CGAP (NCI)Hs.196129
Alternative Splicing : Fast-db (Paris)GSHG0027491
Alternative Splicing GalleryENSG00000135164
Gene ExpressionDMTF1 [ NCBI-GEO ]   DMTF1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y222 (SRS) Q9Y222 (Uniprot)
NextProtQ9Y222
With graphics : InterProQ9Y222
Splice isoforms : SwissVarQ9Y222(Swissvar)
Domaine pattern : Prosite (SRS)HTH_MYB (PS51294)    MYB_LIKE (PS50090)   
Domaine pattern : Prosite (Expaxy)HTH_MYB (PS51294)    MYB_LIKE (PS50090)   
Domains : Interpro (SRS)Homeodomain-like    Myb-like_dom    Myb_dom    SANT/Myb   
Domains : Interpro (EBI)Homeodomain-like    Myb-like_dom    Myb_dom    SANT/Myb   
Related proteins : CluSTrQ9Y222
Domain families : Pfam (SRS)Myb_DNA-binding (PF00249)   
Domain families : Pfam (Sanger)Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam00249   
Domain families : Smart (EMBL)SANT (SM00717)  
DMDM9988
Blocks (Seattle)Q9Y222
PDB (SRS)2LLK   
PDB (PDBSum)2LLK   
PDB (IMB)2LLK   
PDB (RSDB)2LLK   
Human Protein AtlasENSG00000135164
HPRD09770
IPIIPI00028123   IPI00889129   IPI00852885   IPI00887567   IPI01009399   IPI00915375   IPI01021375   IPI00926071   IPI00925365   IPI00926747   IPI00926549   IPI00926340   IPI00927945   IPI00927686   IPI00924886   IPI00927285   IPI00926715   IPI00926030   IPI00925619   IPI00926309   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y222
IntAct (EBI)Q9Y222
FunCoupENSG00000135164
REACTOMEDMTF1
Protein Interaction Database9988
BioGRIDDMTF1
InParanoidQ9Y222
Interologous Interaction database Q9Y222
IntegromeDBDMTF1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DMTF1
SNP (GeneSNP Utah)DMTF1
SNP : HGBaseDMTF1
Genetic variants : HAPMAPDMTF1
Somatic Mutations in Cancer : COSMICDMTF1 
CONAN: Copy Number AnalysisDMTF1 
Mutations and Diseases : HGMDDMTF1
OMIM608491   
GENETests608491   
Disease Genetic AssociationDMTF1
Huge Navigator DMTF1 [HugePedia]  DMTF1 [HugeCancerGEM]
Genomic VariantsDMTF1  DMTF1 [DGVbeta]
ClinVarDMTF1
snp3D : Map Gene to Disease9988
General knowledge
Homologs : HomoloGeneDMTF1
Homology/Alignments : Family Browser (UCSC)DMTF1
Phylogenetic Trees/Animal Genes : TreeFamDMTF1
Chemical/Protein Interactions : CTD9988
Chemical/Pharm GKB GenePA27389
Clinical trialDMTF1
Cancer Resource (Charite)ENSG00000135164
Ontology : AmiGODNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  nucleus  nucleolus  cytoplasm  transcription, DNA-dependent  regulation of transcription, DNA-dependent  cell cycle  
Ontology : EGO-EBIDNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  nucleus  nucleolus  cytoplasm  transcription, DNA-dependent  regulation of transcription, DNA-dependent  cell cycle  
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
PubGeneDMTF1
iHOPDMTF1

Bibliography

Interaction of D-type cyclins with a novel myb-like transcription factor, DMP1.
Hirai H, Sherr CJ.
Mol Cell Biol. 1996 Nov;16(11):6457-67.
PMID 8887674
 
Gene expression and cell cycle arrest mediated by transcription factor DMP1 is antagonized by D-type cyclins through a cyclin-dependent-kinase-independent mechanism.
Inoue K, Sherr CJ.
Mol Cell Biol. 1998 Mar;18(3):1590-600.
PMID 9488476
 
Regulation of the CD13/aminopeptidase N gene by DMP1, a transcription factor antagonized by D-type cyclins.
Inoue K, Sherr CJ, Shapiro LH.
J Biol Chem. 1998 Oct 30;273(44):29188-94.
PMID 9786929
 
Cloning and chromosomal localization of the gene encoding human cyclin D-binding Myb-like protein (hDMP1).
Bodner SM, Naeve CW, Rakestraw KM, Jones BG, Valentine VA, Valentine MB, Luthardt FW, Willman CL, Raimondi SC, Downing JR, Roussel MF, Sherr CJ, Look AT.
Gene. 1999 Mar 18;229(1-2):223-8.
PMID 10095122
 
Induction of ARF tumor suppressor gene expression and cell cycle arrest by transcription factor DMP1.
Inoue K, Roussel MF, Sherr CJ.
Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):3993-8.
PMID 10097151
 
Disruption of the ARF transcriptional activator DMP1 facilitates cell immortalization, Ras transformation, and tumorigenesis.
Inoue K, Wen R, Rehg JE, Adachi M, Cleveland JL, Roussel MF, Sherr CJ.
Genes Dev. 2000 Jul 15;14(14):1797-809.
PMID 10898794
 
Dmp1 is haplo-insufficient for tumor suppression and modifies the frequencies of Arf and p53 mutations in Myc-induced lymphomas.
Inoue K, Zindy F, Randle DH, Rehg JE, Sherr CJ.
Genes Dev. 2001 Nov 15;15(22):2934-9.
PMID 11711428
 
Alternative splicing of the human cyclin D-binding Myb-like protein (hDMP1) yields a truncated protein isoform that alters macrophage differentiation patterns.
Tschan MP, Fischer KM, Fung VS, Pirnia F, Borner MM, Fey MF, Tobler A, Torbett BE.
J Biol Chem. 2003 Oct 31;278(44):42750-60.
PMID 12917399
 
Ras-Raf-Arf signaling critically depends on the Dmp1 transcription factor.
Sreeramaneni R, Chaudhry A, McMahon M, Sherr CJ, Inoue K.
Mol Cell Biol. 2005 Jan;25(1):220-32.
PMID 15601844
 
Expression of Dmp1 in specific differentiated, nonproliferating cells and its regulation by E2Fs.
Mallakin A, Taneja P, Matise LA, Willingham MC, Inoue K.
Oncogene. 2006 Dec 14;25(59):7703-13.
PMID 16878159
 
Dmp1 and tumor suppression. (Review).
Inoue K, Mallakin A, Frazier DP.
Oncogene. 2007 Jun 28;26(30):4329-35.
PMID 17237816
 
Mutually exclusive inactivation of DMP1 and ARF/p53 in lung cancer.
Mallakin A, Sugiyama T, Taneja P, Matise LA, Frazier DP, Choudhary M, Hawkins GA, D'Agostino RB Jr, Willingham MC, Inoue K.
Cancer Cell. 2007 Oct;12(4):381-94.
PMID 17936562
 
Repression of Dmp1 and Arf transcription by anthracyclins: critical roles of the NF-kappaB subunit p65.
Taneja P, Mallakin A, Matise LA, Frazier DP, Choudhary M, Inoue K.
Oncogene. 2007 Nov 22;26(53):7457-66.
PMID 17546045
 
Emerging roles of DMP1 in lung cancer.
Inoue K, Sugiyama T, Taneja P, Morgan RL, Frazier DP.
Cancer Res. 2008 Jun 15;68(12):4487-90.
PMID 18559489
 
Role of DMP1 and its future in lung cancer diagnostics.
Sugiyama T, Frazier DP, Taneja P, Morgan RL, Willingham MC, Inoue K.
Expert Rev Mol Diagn. 2008 Jul;8(4):435-47.
PMID 18598225
 
Oncogenic and non-oncogenic signaling pathways that regulate Dmp1 (Dmtf1).
Sugiyama T, Taneja P, Frazier DP, Kendig R, Morgan RL, Matise LA, Lagedrost SJ, Inoue K.
Clinical Medicine: Oncology. 2008 2, 1-11.
 
The hDMP1 tumor suppressor is a new WT1 target in myeloid leukemias.
Tschan MP, Gullberg U, Shan D, Torbett BE, Fey MF, Tobler A.
Leukemia. 2008 May;22(5):1087-90.
PMID 17972942
 
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Contributor(s)

Written11-2008Kazushi Inoue
Dept. of Pathology, Wake Forest University Health Sciences, 2102 Gray Building, Medical Center Boulevard, Winston-Salem, NC 27157-0001, USA

Citation

This paper should be referenced as such :
Inoue K . DMTF1 (cyclin D binding myb-like transcription factor 1). Atlas Genet Cytogenet Oncol Haematol. November 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/DMTF1ID40340ch7q21.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/44580/1/11-2008-DMTF1ID40340ch7q21.pdf   [ Bibliographic record ]

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