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DMXL1 (Dmx like 1)

Identity

Other alias-
HGNC (Hugo) DMXL1
LocusID (NCBI) 1657
Atlas_Id 62539
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 119071087 and ends at 119249129 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DMXL1   2937
Cards
Entrez_Gene (NCBI)DMXL1  1657  Dmx like 1
Aliases
GeneCards (Weizmann)DMXL1
Ensembl hg19 (Hinxton)ENSG00000172869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172869 [Gene_View]  chr5:119071087-119249129 [Contig_View]  DMXL1 [Vega]
ICGC DataPortalENSG00000172869
TCGA cBioPortalDMXL1
AceView (NCBI)DMXL1
Genatlas (Paris)DMXL1
WikiGenes1657
SOURCE (Princeton)DMXL1
Genetics Home Reference (NIH)DMXL1
Genomic and cartography
GoldenPath hg38 (UCSC)DMXL1  -     chr5:119071087-119249129 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMXL1  -     5q23.1   [Description]    (hg19-Feb_2009)
EnsemblDMXL1 - 5q23.1 [CytoView hg19]  DMXL1 - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBIDMXL1 [Mapview hg19]  DMXL1 [Mapview hg38]
OMIM605671   
Gene and transcription
Genbank (Entrez)AA876135 AB593142 AJ005821 AK126726 BC028004
RefSeq transcript (Entrez)NM_001290321 NM_001290322 NM_001349239 NM_001349240 NM_005509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMXL1
Cluster EST : UnigeneHs.181042 [ NCBI ]
CGAP (NCI)Hs.181042
Alternative Splicing GalleryENSG00000172869
Gene ExpressionDMXL1 [ NCBI-GEO ]   DMXL1 [ EBI - ARRAY_EXPRESS ]   DMXL1 [ SEEK ]   DMXL1 [ MEM ]
Gene Expression Viewer (FireBrowse)DMXL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1657
GTEX Portal (Tissue expression)DMXL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y485   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y485  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y485
Splice isoforms : SwissVarQ9Y485
PhosPhoSitePlusQ9Y485
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Rav1p_C    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)Rav1p_C (PF12234)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12234    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DMXL1
DMDM Disease mutations1657
Blocks (Seattle)DMXL1
SuperfamilyQ9Y485
Human Protein AtlasENSG00000172869
Peptide AtlasQ9Y485
HPRD09294
IPIIPI00294728   IPI00966357   IPI00807343   IPI00967764   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y485
IntAct (EBI)Q9Y485
FunCoupENSG00000172869
BioGRIDDMXL1
STRING (EMBL)DMXL1
ZODIACDMXL1
Ontologies - Pathways
QuickGOQ9Y485
Ontology : AmiGOvacuolar acidification  RAVE complex  vacuolar proton-transporting V-type ATPase complex assembly  
Ontology : EGO-EBIvacuolar acidification  RAVE complex  vacuolar proton-transporting V-type ATPase complex assembly  
NDEx NetworkDMXL1
Atlas of Cancer Signalling NetworkDMXL1
Wikipedia pathwaysDMXL1
Orthology - Evolution
OrthoDB1657
GeneTree (enSembl)ENSG00000172869
Phylogenetic Trees/Animal Genes : TreeFamDMXL1
HOVERGENQ9Y485
HOGENOMQ9Y485
Homologs : HomoloGeneDMXL1
Homology/Alignments : Family Browser (UCSC)DMXL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMXL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMXL1
dbVarDMXL1
ClinVarDMXL1
1000_GenomesDMXL1 
Exome Variant ServerDMXL1
ExAC (Exome Aggregation Consortium)DMXL1 (select the gene name)
Genetic variants : HAPMAP1657
Genomic Variants (DGV)DMXL1 [DGVbeta]
DECIPHERDMXL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMXL1 
Mutations
ICGC Data PortalDMXL1 
TCGA Data PortalDMXL1 
Broad Tumor PortalDMXL1
OASIS PortalDMXL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMXL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDMXL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMXL1
DgiDB (Drug Gene Interaction Database)DMXL1
DoCM (Curated mutations)DMXL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMXL1 (select a term)
intoGenDMXL1
Cancer3DDMXL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605671   
Orphanet
MedgenDMXL1
Genetic Testing Registry DMXL1
NextProtQ9Y485 [Medical]
TSGene1657
GENETestsDMXL1
Target ValidationDMXL1
Huge Navigator DMXL1 [HugePedia]
snp3D : Map Gene to Disease1657
BioCentury BCIQDMXL1
ClinGenDMXL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1657
Chemical/Pharm GKB GenePA27391
Clinical trialDMXL1
Miscellaneous
canSAR (ICR)DMXL1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMXL1
EVEXDMXL1
GoPubMedDMXL1
iHOPDMXL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:25 CEST 2017

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