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DNAAF2 (dynein, axonemal, assembly factor 2)

Identity

Alias_namesC14orf104
chromosome 14 open reading frame 104
dynein, axonemal, assembly factor 2
dynein (axonemal) assembly factor 2
Alias_symbol (synonym)FLJ10563
KTU
PF13
CILD10
Other alias
HGNC (Hugo) DNAAF2
LocusID (NCBI) 55172
Atlas_Id 62541
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 50091892 and ends at 50101948 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAAF2   20188
Cards
Entrez_Gene (NCBI)DNAAF2  55172  dynein, axonemal, assembly factor 2
AliasesC14orf104; CILD10; KTU; PF13
GeneCards (Weizmann)DNAAF2
Ensembl hg19 (Hinxton)ENSG00000165506 [Gene_View]  chr14:50091892-50101948 [Contig_View]  DNAAF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165506 [Gene_View]  chr14:50091892-50101948 [Contig_View]  DNAAF2 [Vega]
ICGC DataPortalENSG00000165506
TCGA cBioPortalDNAAF2
AceView (NCBI)DNAAF2
Genatlas (Paris)DNAAF2
WikiGenes55172
SOURCE (Princeton)DNAAF2
Genetics Home Reference (NIH)DNAAF2
Genomic and cartography
GoldenPath hg19 (UCSC)DNAAF2  -     chr14:50091892-50101948 -  14q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAAF2  -     14q21.3   [Description]    (hg38-Dec_2013)
EnsemblDNAAF2 - 14q21.3 [CytoView hg19]  DNAAF2 - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBIDNAAF2 [Mapview hg19]  DNAAF2 [Mapview hg38]
OMIM612517   612518   
Gene and transcription
Genbank (Entrez)AK001425 BC011400 BC013322 BX092175 BX248264
RefSeq transcript (Entrez)NM_001083908 NM_018139
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_013070 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)DNAAF2
Cluster EST : UnigeneHs.231761 [ NCBI ]
CGAP (NCI)Hs.231761
Alternative Splicing GalleryENSG00000165506
Gene ExpressionDNAAF2 [ NCBI-GEO ]   DNAAF2 [ EBI - ARRAY_EXPRESS ]   DNAAF2 [ SEEK ]   DNAAF2 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAAF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55172
GTEX Portal (Tissue expression)DNAAF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVR5
Splice isoforms : SwissVarQ9NVR5
PhosPhoSitePlusQ9NVR5
Domains : Interpro (EBI)PIH1   
Domain families : Pfam (Sanger)PIH1 (PF08190)   
Domain families : Pfam (NCBI)pfam08190   
Conserved Domain (NCBI)DNAAF2
DMDM Disease mutations55172
Blocks (Seattle)DNAAF2
SuperfamilyQ9NVR5
Human Protein AtlasENSG00000165506
Peptide AtlasQ9NVR5
HPRD12627
IPIIPI00018698   IPI00056562   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVR5
IntAct (EBI)Q9NVR5
FunCoupENSG00000165506
BioGRIDDNAAF2
STRING (EMBL)DNAAF2
ZODIACDNAAF2
Ontologies - Pathways
QuickGOQ9NVR5
Ontology : AmiGOpositive regulation of defense response to virus by host  protein binding  cytoplasm  response to retinoic acid  cilium-dependent cell motility  axonemal dynein complex assembly  bacterial-type flagellum-dependent cell motility  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  protein binding  cytoplasm  response to retinoic acid  cilium-dependent cell motility  axonemal dynein complex assembly  bacterial-type flagellum-dependent cell motility  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkDNAAF2
Atlas of Cancer Signalling NetworkDNAAF2
Wikipedia pathwaysDNAAF2
Orthology - Evolution
OrthoDB55172
GeneTree (enSembl)ENSG00000165506
Phylogenetic Trees/Animal Genes : TreeFamDNAAF2
HOVERGENQ9NVR5
HOGENOMQ9NVR5
Homologs : HomoloGeneDNAAF2
Homology/Alignments : Family Browser (UCSC)DNAAF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAAF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAAF2
dbVarDNAAF2
ClinVarDNAAF2
1000_GenomesDNAAF2 
Exome Variant ServerDNAAF2
ExAC (Exome Aggregation Consortium)DNAAF2 (select the gene name)
Genetic variants : HAPMAP55172
Genomic Variants (DGV)DNAAF2 [DGVbeta]
DECIPHER (Syndromes)14:50091892-50101948  ENSG00000165506
CONAN: Copy Number AnalysisDNAAF2 
Mutations
ICGC Data PortalDNAAF2 
TCGA Data PortalDNAAF2 
Broad Tumor PortalDNAAF2
OASIS PortalDNAAF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAAF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAAF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAAF2
DgiDB (Drug Gene Interaction Database)DNAAF2
DoCM (Curated mutations)DNAAF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAAF2 (select a term)
intoGenDNAAF2
Cancer3DDNAAF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612517    612518   
Orphanet665   
MedgenDNAAF2
Genetic Testing Registry DNAAF2
NextProtQ9NVR5 [Medical]
TSGene55172
GENETestsDNAAF2
Huge Navigator DNAAF2 [HugePedia]
snp3D : Map Gene to Disease55172
BioCentury BCIQDNAAF2
ClinGenDNAAF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55172
Chemical/Pharm GKB GenePA134910310
Clinical trialDNAAF2
Miscellaneous
canSAR (ICR)DNAAF2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAAF2
EVEXDNAAF2
GoPubMedDNAAF2
iHOPDNAAF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:01:53 CET 2017

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