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DNAAF4-CCPG1 (DNAAF4-CCPG1 readthrough (NMD candidate))

Identity

Alias_namesDYX1C1-CCPG1
DYX1C1-CCPG1 readthrough (NMD candidate)
Other alias
HGNC (Hugo) DNAAF4-CCPG1
LocusID (NCBI) 100533483
Atlas_Id 79882
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 55355223 and ends at 55498584 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAAF4-CCPG1   43019
Cards
Entrez_Gene (NCBI)DNAAF4-CCPG1  100533483  DNAAF4-CCPG1 readthrough (NMD candidate)
AliasesDYX1C1-CCPG1
GeneCards (Weizmann)DNAAF4-CCPG1
Ensembl hg19 (Hinxton)ENSG00000261771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261771 [Gene_View]  chr15:55355223-55498584 [Contig_View]  DNAAF4-CCPG1 [Vega]
ICGC DataPortalENSG00000261771
TCGA cBioPortalDNAAF4-CCPG1
AceView (NCBI)DNAAF4-CCPG1
Genatlas (Paris)DNAAF4-CCPG1
WikiGenes100533483
SOURCE (Princeton)DNAAF4-CCPG1
Genetics Home Reference (NIH)DNAAF4-CCPG1
Genomic and cartography
GoldenPath hg38 (UCSC)DNAAF4-CCPG1  -     chr15:55355223-55498584 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAAF4-CCPG1  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblDNAAF4-CCPG1 - 15q21.3 [CytoView hg19]  DNAAF4-CCPG1 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIDNAAF4-CCPG1 [Mapview hg19]  DNAAF4-CCPG1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK295788 BC051725
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAAF4-CCPG1
Cluster EST : UnigeneHs.285051 [ NCBI ]
CGAP (NCI)Hs.285051
Alternative Splicing GalleryENSG00000261771
Gene ExpressionDNAAF4-CCPG1 [ NCBI-GEO ]   DNAAF4-CCPG1 [ EBI - ARRAY_EXPRESS ]   DNAAF4-CCPG1 [ SEEK ]   DNAAF4-CCPG1 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAAF4-CCPG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100533483
GTEX Portal (Tissue expression)DNAAF4-CCPG1
Human Protein AtlasENSG00000261771-DNAAF4-CCPG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DNAAF4-CCPG1
DMDM Disease mutations100533483
Blocks (Seattle)DNAAF4-CCPG1
Human Protein Atlas [tissue]ENSG00000261771-DNAAF4-CCPG1 [tissue]
Protein Interaction databases
FunCoupENSG00000261771
BioGRIDDNAAF4-CCPG1
STRING (EMBL)DNAAF4-CCPG1
ZODIACDNAAF4-CCPG1
Ontologies - Pathways
Huge Navigator DNAAF4-CCPG1 [HugePedia]
snp3D : Map Gene to Disease100533483
BioCentury BCIQDNAAF4-CCPG1
ClinGenDNAAF4-CCPG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533483
Clinical trialDNAAF4-CCPG1
Miscellaneous
canSAR (ICR)DNAAF4-CCPG1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAAF4-CCPG1
EVEXDNAAF4-CCPG1
GoPubMedDNAAF4-CCPG1
iHOPDNAAF4-CCPG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:31:06 CET 2017

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