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DNAH17 (dynein axonemal heavy chain 17)

Identity

Alias_namesDNAHL1
dynein, axonemal, heavy polypeptide 17
dynein, axonemal, heavy chain like 1
dynein, axonemal, heavy like 1
Alias_symbol (synonym)DNEL2
FLJ40457
Other alias
HGNC (Hugo) DNAH17
LocusID (NCBI) 8632
Atlas_Id 62548
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 78423697 and ends at 78577394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGBL4 (1p33) / DNAH17 (17q25.3)APPBP2 (17q23.2) / DNAH17 (17q25.3)SEPT9 (17q25.2) / DNAH17 (17q25.3)
SKAP1 (17q21.32) / DNAH17 (17q25.3)TK1 (17q25.3) / DNAH17 (17q25.3)TMC6 (17q25.3) / DNAH17 (17q25.3)
TK1 DNAH17APPBP2 DNAH17SKAP1 DNAH17
TMC6 DNAH17SEPT9 DNAH17

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAH17   2946
Cards
Entrez_Gene (NCBI)DNAH17  8632  dynein axonemal heavy chain 17
AliasesDNAHL1; DNEL2
GeneCards (Weizmann)DNAH17
Ensembl hg19 (Hinxton)ENSG00000187775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187775 [Gene_View]  chr17:78423697-78577394 [Contig_View]  DNAH17 [Vega]
ICGC DataPortalENSG00000187775
TCGA cBioPortalDNAH17
AceView (NCBI)DNAH17
Genatlas (Paris)DNAH17
WikiGenes8632
SOURCE (Princeton)DNAH17
Genetics Home Reference (NIH)DNAH17
Genomic and cartography
GoldenPath hg38 (UCSC)DNAH17  -     chr17:78423697-78577394 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAH17  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblDNAH17 - 17q25.3 [CytoView hg19]  DNAH17 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIDNAH17 [Mapview hg19]  DNAH17 [Mapview hg38]
OMIM610063   
Gene and transcription
Genbank (Entrez)AB290170 AJ000522 AK097776 AK126059 AK128065
RefSeq transcript (Entrez)NM_003727 NM_173628
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAH17
Cluster EST : UnigeneHs.375975 [ NCBI ]
CGAP (NCI)Hs.375975
Alternative Splicing GalleryENSG00000187775
Gene ExpressionDNAH17 [ NCBI-GEO ]   DNAH17 [ EBI - ARRAY_EXPRESS ]   DNAH17 [ SEEK ]   DNAH17 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAH17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8632
GTEX Portal (Tissue expression)DNAH17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFH2
Splice isoforms : SwissVarQ9UFH2
PhosPhoSitePlusQ9UFH2
Domains : Interpro (EBI)ATPase_dyneun-rel_AAA    DHC_fam    Dynein_HC_stalk    Dynein_heavy_chain_D4_dom    Dynein_heavy_dom    Dynein_heavy_dom-1    Dynein_heavy_dom-2    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA_5 (PF07728)    AAA_8 (PF12780)    DHC_N1 (PF08385)    DHC_N2 (PF08393)    Dynein_heavy (PF03028)    MT (PF12777)   
Domain families : Pfam (NCBI)pfam07728    pfam12780    pfam08385    pfam08393    pfam03028    pfam12777   
Conserved Domain (NCBI)DNAH17
DMDM Disease mutations8632
Blocks (Seattle)DNAH17
SuperfamilyQ9UFH2
Human Protein AtlasENSG00000187775
Peptide AtlasQ9UFH2
HPRD16830
IPIIPI00888430   IPI00943773   IPI00940591   IPI00872980   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFH2
IntAct (EBI)Q9UFH2
FunCoupENSG00000187775
BioGRIDDNAH17
STRING (EMBL)DNAH17
ZODIACDNAH17
Ontologies - Pathways
QuickGOQ9UFH2
Ontology : AmiGOmicrotubule motor activity  ATP binding  cytoplasm  axonemal dynein complex  microtubule  microtubule-based movement  ATPase activity  cilium-dependent cell motility  
Ontology : EGO-EBImicrotubule motor activity  ATP binding  cytoplasm  axonemal dynein complex  microtubule  microtubule-based movement  ATPase activity  cilium-dependent cell motility  
NDEx NetworkDNAH17
Atlas of Cancer Signalling NetworkDNAH17
Wikipedia pathwaysDNAH17
Orthology - Evolution
OrthoDB8632
GeneTree (enSembl)ENSG00000187775
Phylogenetic Trees/Animal Genes : TreeFamDNAH17
HOVERGENQ9UFH2
HOGENOMQ9UFH2
Homologs : HomoloGeneDNAH17
Homology/Alignments : Family Browser (UCSC)DNAH17
Gene fusions - Rearrangements
Fusion: TCGATK1 DNAH17
Fusion: TCGAAPPBP2 DNAH17
Fusion: TCGASKAP1 DNAH17
Fusion: TCGATMC6 DNAH17
Fusion: TCGASEPT9 DNAH17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAH17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAH17
dbVarDNAH17
ClinVarDNAH17
1000_GenomesDNAH17 
Exome Variant ServerDNAH17
ExAC (Exome Aggregation Consortium)DNAH17 (select the gene name)
Genetic variants : HAPMAP8632
Genomic Variants (DGV)DNAH17 [DGVbeta]
DECIPHERDNAH17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAH17 
Mutations
ICGC Data PortalDNAH17 
TCGA Data PortalDNAH17 
Broad Tumor PortalDNAH17
OASIS PortalDNAH17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAH17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAH17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAH17
DgiDB (Drug Gene Interaction Database)DNAH17
DoCM (Curated mutations)DNAH17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAH17 (select a term)
intoGenDNAH17
Cancer3DDNAH17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610063   
Orphanet
MedgenDNAH17
Genetic Testing Registry DNAH17
NextProtQ9UFH2 [Medical]
TSGene8632
GENETestsDNAH17
Target ValidationDNAH17
Huge Navigator DNAH17 [HugePedia]
snp3D : Map Gene to Disease8632
BioCentury BCIQDNAH17
ClinGenDNAH17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8632
Chemical/Pharm GKB GenePA27400
Clinical trialDNAH17
Miscellaneous
canSAR (ICR)DNAH17 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAH17
EVEXDNAH17
GoPubMedDNAH17
iHOPDNAH17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:26 CEST 2017

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