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DNAJB1 (DnaJ (Hsp40) homolog, subfamily B, member 1)

Identity

Other namesHSPF1
Hdj1
Hsp40
RSPH16B
Sis1
HGNC (Hugo) DNAJB1
LocusID (NCBI) 3337
Location 19p13.12
Location_base_pair Starts at 14625582 and ends at 14629201 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJB1   5270
Cards
Entrez_Gene (NCBI)DNAJB1  3337  DnaJ (Hsp40) homolog, subfamily B, member 1
GeneCards (Weizmann)DNAJB1
Ensembl (Hinxton)ENSG00000132002 [Gene_View]  chr19:14625582-14629201 [Contig_View]  DNAJB1 [Vega]
ICGC DataPortalENSG00000132002
cBioPortalDNAJB1
AceView (NCBI)DNAJB1
Genatlas (Paris)DNAJB1
WikiGenes3337
SOURCE (Princeton)NM_001300914 NM_006145
Genomic and cartography
GoldenPath (UCSC)DNAJB1  -  19p13.12   chr19:14625582-14629201 -  19p13.12   [Description]    (hg19-Feb_2009)
EnsemblDNAJB1 - 19p13.12 [CytoView]
Mapping of homologs : NCBIDNAJB1 [Mapview]
OMIM604572   
Gene and transcription
Genbank (Entrez)AK092989 AK301817 AK312624 BC002352 BC013157
RefSeq transcript (Entrez)NM_001300914 NM_006145
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838483 NW_004929414
Consensus coding sequences : CCDS (NCBI)DNAJB1
Cluster EST : UnigeneHs.515210 [ NCBI ]
CGAP (NCI)Hs.515210
Alternative Splicing : Fast-db (Paris)GSHG0015570
Alternative Splicing GalleryENSG00000132002
Gene ExpressionDNAJB1 [ NCBI-GEO ]     DNAJB1 [ SEEK ]   DNAJB1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP25685 (Uniprot)
NextProtP25685  [Medical]
With graphics : InterProP25685
Splice isoforms : SwissVarP25685 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_C [organisation]   DnaJ_domain [organisation]   DnaJ_domain_CS [organisation]   HSP40/DnaJ_pept-bd [organisation]  
Related proteins : CluSTrP25685
Domain families : Pfam (Sanger)CTDII (PF01556)    DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam01556    pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations3337
Blocks (Seattle)P25685
PDB (SRS)1HDJ    2QLD    3AGX    3AGY    3AGZ   
PDB (PDBSum)1HDJ    2QLD    3AGX    3AGY    3AGZ   
PDB (IMB)1HDJ    2QLD    3AGX    3AGY    3AGZ   
PDB (RSDB)1HDJ    2QLD    3AGX    3AGY    3AGZ   
Human Protein AtlasENSG00000132002 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP25685
HPRD05198
IPIIPI00015947   IPI01010489   IPI00984730   
Protein Interaction databases
DIP (DOE-UCLA)P25685
IntAct (EBI)P25685
FunCoupENSG00000132002
BioGRIDDNAJB1
InParanoidP25685
Interologous Interaction database P25685
IntegromeDBDNAJB1
STRING (EMBL)DNAJB1
Ontologies - Pathways
Ontology : AmiGOATPase activator activity  protein binding  nucleus  nucleolus  cytosol  response to unfolded protein  Hsp70 protein binding  positive regulation of ATPase activity  unfolded protein binding  chaperone mediated protein folding requiring cofactor  chaperone binding  ATPase binding  extracellular vesicular exosome  chaperone cofactor-dependent protein refolding  negative regulation of inclusion body assembly  
Ontology : EGO-EBIATPase activator activity  protein binding  nucleus  nucleolus  cytosol  response to unfolded protein  Hsp70 protein binding  positive regulation of ATPase activity  unfolded protein binding  chaperone mediated protein folding requiring cofactor  chaperone binding  ATPase binding  extracellular vesicular exosome  chaperone cofactor-dependent protein refolding  negative regulation of inclusion body assembly  
Pathways : BIOCARTAPrion Pathway [Genes]    Hypoxia and p53 in the Cardiovascular system [Genes]   
Pathways : KEGGProtein processing in endoplasmic reticulum    Influenza A   
Protein Interaction DatabaseDNAJB1
Wikipedia pathwaysDNAJB1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DNAJB1
snp3D : Map Gene to Disease3337
SNP (GeneSNP Utah)DNAJB1
SNP : HGBaseDNAJB1
Genetic variants : HAPMAPDNAJB1
Exome VariantDNAJB1
1000_GenomesDNAJB1 
ICGC programENSG00000132002 
Somatic Mutations in Cancer : COSMICDNAJB1 
CONAN: Copy Number AnalysisDNAJB1 
Mutations and Diseases : HGMDDNAJB1
Genomic VariantsDNAJB1  DNAJB1 [DGVbeta]
dbVarDNAJB1
ClinVarDNAJB1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604572   
MedgenDNAJB1
GENETestsDNAJB1
Disease Genetic AssociationDNAJB1
Huge Navigator DNAJB1 [HugePedia]  DNAJB1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneDNAJB1
Homology/Alignments : Family Browser (UCSC)DNAJB1
Phylogenetic Trees/Animal Genes : TreeFamDNAJB1
Chemical/Protein Interactions : CTD3337
Chemical/Pharm GKB GenePA27412
Clinical trialDNAJB1
Cancer Resource (Charite)ENSG00000132002
Other databases
Probes
Litterature
PubMed97 Pubmed reference(s) in Entrez
CoreMineDNAJB1
iHOPDNAJB1
OncoSearchDNAJB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:51:41 CEST 2014

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